RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 RHBDD2Q6NTF9 364 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 FAM198BQ6UWH4 519 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 KCNMB4Q86W47 210 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 KLHL7Q8IXQ5 586 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 ZNF655Q8N720 491 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-203ENST00000593582 HMGCLL1Q8TB92 370 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 KCNJ9Q92806 393 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 ABHD17AQ96GS6 310 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 NAT9Q9BTE0 207 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 NDC1Q9BTX1 674 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 ZNF71Q9NQZ8 489 aaPredicted RBP14.69□□□□□ -0.06
TRIM28-203ENST00000593582 FAM114A2Q9NRY5 505 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 TXLNGQ9NUQ3 528 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 EURLQ9NYK6 297 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 SPATA7Q9P0W8 599 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 TCFL5Q9UL49 500 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 PYCARDQ9ULZ3 195 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 SRPK3Q9UPE1 567 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 PADI2Q9Y2J8 665 aa14.69□□□□□ -0.06
TRIM28-203ENST00000593582 H3BMH7 237 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 RFPL1O75677 317 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 CATP04040 527 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 F7P08709 466 aaPredicted RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 PAFAH1B1P43034 410 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 PTGIRP43119 386 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 DCDP81605 110 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 NFKB2Q00653 900 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 DHX9Q08211 1270 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 NCF4Q15080 339 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 CYP2A13Q16696 494 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 ZC3H12BQ5HYM0 836 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 C1orf189Q5VU69 101 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 FIGLAQ6QHK4 219 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 ATG14Q6ZNE5 492 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 NEK10Q6ZWH5 1172 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 PTRH1Q86Y79 214 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 MCATQ8IVS2 390 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 APLFQ8IW19 511 aaPredicted RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 PDIK1LQ8N165 341 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 OR9A1PQ8NGU1 263 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 PROKR1Q8TCW9 393 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 DENND1AQ8TEH3 1009 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 ZUFSPQ96AP4 578 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 EBNA1BP2Q99848 306 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 DHRS4Q9BTZ2 278 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 IARS2Q9NSE4 1012 aaKnown RBP14.68□□□□□ -0.06
TRIM28-203ENST00000593582 FBXO5Q9UKT4 447 aa14.68□□□□□ -0.06
TRIM28-203ENST00000593582 KRT87PA6NCN2 255 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ARHGEF33A8MVX0 844 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 TARM1B6A8C7 271 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 SMAPO00193 183 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 SUV39H1O43463 412 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 PRICKLE3O43900 615 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 PSIP1O75475 530 aaKnown RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 HAUS5O94927 633 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 CAPN1P07384 714 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 CTSBP07858 339 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 CD63P08962 238 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ERVK-10P10266 1014 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ENO3P13929 434 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 IVDP26440 423 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 HSD17B2P37059 387 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 GRIA3P42263 894 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 MPP1Q00013 466 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 MORF4L2Q15014 288 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 BBS9Q3SYG4 887 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 LACTB2Q53H82 288 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 EEF1AKMT2Q5JPI9 291 aaKnown RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 SPANXN3Q5MJ09 141 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ZNF385CQ66K41 422 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 FCRL6Q6DN72 434 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ZNF549Q6P9A3 640 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 OR2L3Q8NG85 312 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 GIMAP7Q8NHV1 300 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 DLG3Q92796 817 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 INPP5DQ92835 1189 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 GBP5Q96PP8 586 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 SLC30A3Q99726 388 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 MIPEPQ99797 713 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 IFT80Q9P2H3 777 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 DHCR7Q9UBM7 475 aaKnown RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 RNF14Q9UBS8 474 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 GPN3Q9UHW5 284 aaPredicted RBP14.67□□□□□ -0.06
TRIM28-203ENST00000593582 MED16Q9Y2X0 877 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 DHRS7Q9Y394 339 aa14.67□□□□□ -0.06
TRIM28-203ENST00000593582 ZNF839A8K0R7 811 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 CCDC188H7C350 402 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 MYO1CO00159 1063 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 VPS26AO75436 327 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 BANF1O75531 89 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 CBSLP0DN79 551 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 PSMB5P28074 263 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 CBSP35520 551 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 ARSFP54793 590 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 CUL1Q13616 776 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 ARHGAP19Q14CB8 494 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 NAA25Q14CX7 972 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 NKAIN1Q4KMZ8 207 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 MSS51Q4VC12 460 aa14.66□□□□□ -0.06
TRIM28-203ENST00000593582 TCTE1Q5JU00 501 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms