RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 GP5P40197 560 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 ATP1A2P50993 1020 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 POU4F1Q01851 419 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 KBTBD12Q3ZCT8 623 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 UBE2R2Q712K3 238 aaPredicted RBP11.48□□□□□ -0.57
LIG3-213ENST00000590630 TRIM73Q86UV7 250 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 CTAGE3PQ8IX95 158 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 IFT20Q8IY31 132 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 MCOLN3Q8TDD5 553 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 FBF1Q8TES7 1133 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 LINGO1Q96FE5 620 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 SLC12A9Q9BXP2 914 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 SPRY4Q9C004 299 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 POPDC3Q9HBV1 291 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 INTS7Q9NVH2 962 aaKnown RBP11.48□□□□□ -0.57
LIG3-213ENST00000590630 FAM208BQ5VWN6 2430 aa11.48□□□□□ -0.57
LIG3-213ENST00000590630 MDC1Q14676 2089 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 KRT87PA6NCN2 255 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 PRICKLE3O43900 615 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 ZNF500O60304 480 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 DLGAP3O95886 979 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 SLC16A8O95907 504 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 CYP2A7P20853 494 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 OAS2P29728 719 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 ECHS1P30084 290 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 PNLIPRP1P54315 467 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 SLC12A2P55011 1212 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 TMPRSS3P57727 454 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 MAP7Q14244 749 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 NAA25Q14CX7 972 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 TGIF1Q15583 401 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 SF1Q15637 639 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 GPR19Q15760 415 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 GRTP1Q5TC63 336 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 CDHR3Q6ZTQ4 885 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 TAX1BP1Q86VP1 789 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 NLGN4XQ8N0W4 816 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 NKAPQ8N5F7 415 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 C2orf73Q8N5S3 287 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 PPM1NQ8N819 430 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 LMNTD1Q8N9Z9 388 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 NLGN4YQ8NFZ3 816 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 HNRNPLLQ8WVV9 542 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 SMPDL3AQ92484 453 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 ANKRD7Q92527 254 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 NKD1Q969G9 470 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 ZNF501Q96CX3 271 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 TSPAN17Q96FV3 270 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 PDLIM5Q96HC4 596 aaKnown RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 CCNL2Q96S94 520 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 PKP4Q99569 1192 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 GPR22Q99680 433 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 RBBP8Q99708 897 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 KLHL25Q9H0H3 589 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 PARVBQ9HBI1 364 aa11.47□□□□□ -0.57
LIG3-213ENST00000590630 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.47□□□□□ -0.57
LIG3-213ENST00000590630 IGSF10Q6WRI0 2623 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 A0A1W2PPV9 198 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 PABPN1LA6NDY0 278 aaKnown RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 TARM1B6A8C7 271 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 TMEM150CB9EJG8 249 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 RAD1O60671 282 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 KIAA0754O94854 1291 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SYF2O95926 243 aaKnown RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 MT-ND3P03897 115 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 HIST1H2AGP0C0S8 130 aaPredicted RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 RHOXF2BP0C7M4 288 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 ZNF28P17035 718 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 HIST1H2ADP20671 130 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 MAGP20916 626 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SAT1P21673 171 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SPRP35270 261 aaPredicted RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 AP1S2P56377 157 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 TAS2R39P59534 338 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 FASTKQ14296 549 aaKnown RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 ZIC1Q15915 447 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 MANEAQ5SRI9 462 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 PWWP2BQ6NUJ5 590 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SPNS2Q8IVW8 549 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SYTL1Q8IYJ3 562 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 CACNA2D3Q8IZS8 1091 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 ESX1Q8N693 406 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 IL22RA1Q8N6P7 574 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 OR2L3Q8NG85 312 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 OR2A1Q8NGT9 310 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 ZNF480Q8WV37 535 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 DLG3Q92796 817 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 N4BP2L2Q92802 583 aaPredicted RBP11.46□□□□□ -0.57
LIG3-213ENST00000590630 ZUFSPQ96AP4 578 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 HIST1H2AHQ96KK5 128 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 CCDC138Q96M89 665 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 CYTH2Q99418 400 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 HIST1H2AJQ99878 128 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 RHOXF2Q9BQY4 288 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 H2AFJQ9BTM1 129 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 GPAMQ9HCL2 828 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 NINJ2Q9NZG7 142 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 SERTAD3Q9UJW9 196 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 ADAMTS6Q9UKP5 1117 aa11.46□□□□□ -0.57
LIG3-213ENST00000590630 PDE10AQ9Y233 779 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms