RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	FAM60A	Q9NP50	221 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	C20orf96	Q9NUD7	363 aa	Predicted RBP	12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ANKMY1	Q9P2S6	941 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	TCFL5	Q9UL49	500 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PLAGL1	Q9UM63	463 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SNX7	Q9UNH6	387 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MAN2B2	Q9Y2E5	1009 aa		12.12	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SPTB	P11277	2137 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	UBR5	O95071	2799 aa	Predicted RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MYO1C	O00159	1063 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ONECUT2	O95948	504 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	IGHE	P01854	428 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CAPN1	P07384	714 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MPC1L	P0DKB6	136 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ERG	P11308	486 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MAG	P20916	626 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SKIV2L2	P42285	1042 aa	Known RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PAFAH1B1	P43034	410 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PTGIR	P43119	386 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CLCN7	P51798	805 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	TERF1	P54274	439 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	NCF4	Q15080	339 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SPANXN3	Q5MJ09	141 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	UGT3A1	Q6NUS8	523 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FAM198B	Q6UWH4	519 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MCAT	Q8IVS2	390 aa	Known RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PDIK1L	Q8N165	341 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	OR9A1P	Q8NGU1	263 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	INPP5D	Q92835	1189 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ZNF285	Q96NJ3	590 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	EBNA1BP2	Q99848	306 aa	Known RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	NDC1	Q9BTX1	674 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	KLHL25	Q9H0H3	589 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	DDX47	Q9H0S4	455 aa	Known RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	TXLNG	Q9NUQ3	528 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	UTP6	Q9NYH9	597 aa	Known RBP	12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	EURL	Q9NYK6	297 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	IL1RAPL1	Q9NZN1	696 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ANAPC2	Q9UJX6	822 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FBXO5	Q9UKT4	447 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	DHRS7	Q9Y394	339 aa		12.11	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SLC28A2	O43868	658 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FURIN	P09958	794 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PIM1	P11309	404 aa	Predicted RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	IVD	P26440	423 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	RRAD	P55042	308 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	DCD	P81605	110 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	DR1	Q01658	176 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	RELA	Q04206	551 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ILF2	Q12905	390 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CBLB	Q13191	982 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CTBP1	Q13363	440 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FRG1	Q14331	258 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	GRM7	Q14831	915 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CRYM	Q14894	314 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	KLHL38	Q2WGJ6	581 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FAM214A	Q32MH5	1076 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	LACTB2	Q53H82	288 aa	Predicted RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ACSBG2	Q5FVE4	666 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ATP1A1-AS1	Q5TC04	95 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CNST	Q6PJW8	725 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FIGLA	Q6QHK4	219 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	KCNMB4	Q86W47	210 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	DENND6A	Q8IWF6	608 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CNTN4	Q8IWV2	1026 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	AGGF1	Q8N302	714 aa	eCLIP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ENDOV	Q8N8Q3	282 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	C2CD4A	Q8NCU7	369 aa	Predicted RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	OR2A1	Q8NGT9	310 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ADAMTS17	Q8TE56	1095 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ASB11	Q8WXH4	323 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SMPDL3A	Q92484	453 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ABHD17A	Q96GS6	310 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	GBP5	Q96PP8	586 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CORO1C	Q9ULV4	474 aa	Predicted RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PCDHGB7	Q9Y5F8	929 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PCDHGA9	Q9Y5G4	932 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	NFS1	Q9Y697	457 aa		12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SNRNP200	O75643	2136 aa	Known RBP	12.1	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	FITM1	A5D6W6	292 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	USP27X	A6NNY8	438 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ARHGEF33	A8MVX0	844 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	GFY	I3L273	518 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	KLHL41	O60662	606 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	VPS26A	O75436	327 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CCNDBP1	O95273	360 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ALB	P02768	609 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	CMPK1	P30085	196 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	GRIA3	P42263	894 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SLC1A2	P43004	574 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	GCGR	P47871	477 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	EMP3	P54852	163 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	SSPN	Q14714	243 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	NKAIN1	Q4KMZ8	207 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	HSP90AA5P	Q58FG0	334 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	PRAMEF17	Q5VTA0	474 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	ZNF549	Q6P9A3	640 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	MED25	Q71SY5	747 aa		12.09	□□□□□ -0.47
CDK5RAP3-222	ENST00000581708	RAB43	Q86YS6	212 aa		12.09	□□□□□ -0.47

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms