RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 AP2A2O94973 939 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 CYP2A6P11509 494 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 TYRP14679 529 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 HOXB9P17482 250 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 TACR1P25103 407 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 VIPR1P32241 457 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 S100A3P33764 101 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 NRIP1P48552 1158 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 EPHA5P54756 1037 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DAG1Q14118 895 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TEAD2Q15562 447 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 LPCAT2Q7L5N7 544 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 HSD11B1LQ7Z5J1 315 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 RASGRP3Q8IV61 690 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 MICU2Q8IYU8 434 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 PHACTR4Q8IZ21 702 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ZNF557Q8N988 423 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 MCOLN3Q8TDD5 553 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TESCQ96BS2 214 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 HHIPQ96QV1 700 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 CPPED1Q9BRF8 314 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 YTHDF1Q9BYJ9 559 aaKnown RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 LINC00597Q9H2U6 94 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FAM83DQ9H4H8 585 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 SPHK2Q9NRA0 654 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DNAJC11Q9NVH1 559 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DDX18Q9NVP1 670 aaKnown RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 DNAJB9Q9UBS3 223 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TMED5Q9Y3A6 229 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TRIM43BA6NCK2 446 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FAM220BPB1ANY3 271 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 CFAP99D6REC4 459 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 MOSPD3O75425 235 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 HPRP00739 348 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ALBP02768 609 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 RETP07949 1114 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ACPPP15309 386 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 SDC1P18827 310 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DDX6P26196 483 aaKnown RBP eCLIP9.81□□□□□ -0.84
VPS53-220ENST00000576149 PTPN6P29350 595 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 RECQLP46063 649 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 CLK1P49759 484 aaKnown RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 GZMMP51124 257 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DCDC1P59894 354 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 PFN3P60673 137 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ESRRGP62508 458 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ZBED5Q49AG3 693 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FRG2Q64ET8 278 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TMEM215Q68D42 235 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ELMSAN1Q6PJG2 1045 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 GCNT7Q6ZNI0 430 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FKBP9P1Q75LS8 142 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 GPR141Q7Z602 305 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 GPR149Q86SP6 731 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 STK32CQ86UX6 486 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ZDHHC13Q8IUH4 622 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FRS2Q8WU20 508 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ASZ1Q8WWH4 475 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 MYLIPQ8WY64 445 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TRIM43Q96BQ3 446 aaPredicted RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 SLC47A1Q96FL8 570 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 APIPQ96GX9 242 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 ITCHQ96J02 903 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TSSK3Q96PN8 268 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 FRG2BQ96QU4 278 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 HEPHQ9BQS7 1158 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 RMND5AQ9H871 391 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 TDP1Q9NUW8 608 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 DCAF13Q9NV06 445 aaKnown RBP9.81□□□□□ -0.84
VPS53-220ENST00000576149 PPT2Q9UMR5 302 aa9.81□□□□□ -0.84
VPS53-220ENST00000576149 KRT87PA6NCN2 255 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 C16orf96A6NNT2 1141 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 G3V2T6 193 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 CREG1O75629 220 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 PRKD3O94806 890 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 SLCO2B1O94956 709 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 RECKO95980 971 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 THRBP10828 461 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 JUPP14923 745 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ITPKAP23677 461 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MAPK1P28482 360 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 KCNC3Q14003 757 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 PLCL1Q15111 1095 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 PON2Q15165 354 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 Q6ZVL8 140 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 KIAA0907Q7Z7F0 614 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 ERI1Q8IV48 349 aaKnown RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 C10orf111Q8N326 155 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 TMEM132CQ8N3T6 1108 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 DDHD1Q8NEL9 900 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ELMO1Q92556 727 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FAM162AQ96A26 154 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 FBXL8Q96CD0 374 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MAGEB10Q96LZ2 347 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 INPP5KQ9BT40 448 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 NPLQ9BXD5 320 aaPredicted RBP9.8□□□□□ -0.84
VPS53-220ENST00000576149 HPS4Q9NQG7 708 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 PCDH10Q9P2E7 1040 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 ERVW-1Q9UQF0 538 aa9.8□□□□□ -0.84
VPS53-220ENST00000576149 MAGED1Q9Y5V3 778 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms