RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 PCMTD2Q9NV79 361 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 SERTAD3Q9UJW9 196 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 KLHL20Q9Y2M5 609 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 SNX24Q9Y343 169 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 ATRXP46100 2492 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 PCM1Q15154 2024 aa12.55□□□□□ -0.4
CNOT1-220ENST00000569916 FAM187AA6NFU0 413 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 E7EQ34 232 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 MYO1CO00159 1063 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 MEN1O00255 615 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 RAD51CO43502 376 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 KALRNO60229 2985 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 VPS26AO75436 327 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 KATNA1O75449 491 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FKBP9O95302 570 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CATP04040 527 aaKnown RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FAM87AP0C7U9 286 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 MPC1LP0DKB6 136 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 ENO3P13929 434 aaPredicted RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CARSP49589 748 aaKnown RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CBLBQ13191 982 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FASTKQ14296 549 aaKnown RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FASTKD3Q14CZ7 662 aaKnown RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CYP2A13Q16696 494 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 RBM20Q5T481 1227 aaKnown RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 TEDDM1Q5T9Z0 273 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 ZNF385CQ66K41 422 aaPredicted RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FCRL6Q6DN72 434 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 LCN10Q6JVE6 187 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 C16orf46Q6P387 395 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 BORAQ6PGQ7 559 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 GALNT7Q86SF2 657 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 ZNF843Q8N446 348 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FBXO15Q8NCQ5 510 aaPredicted RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 OR9A1PQ8NGU1 263 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 INPP5DQ92835 1189 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 MR1Q95460 341 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CLIP3Q96DZ5 547 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 ARHGAP9Q9BRR9 750 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CHST8Q9H2A9 424 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 ACTL8Q9H568 366 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 FAM114A2Q9NRY5 505 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.54□□□□□ -0.4
CNOT1-220ENST00000569916 PLCL2Q9UPR0 1127 aa12.54□□□□□ -0.4
CNOT1-220ENST00000569916 EIF3FO00303 357 aaPredicted RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 NDC80O14777 642 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 ZNF749O43361 778 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 CREG1O75629 220 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 OR2B3O76000 313 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 AHSGP02765 367 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 KLK3P07288 261 aaPredicted RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 FURINP09958 794 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 CBSLP0DN79 551 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PTPN4P29074 926 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 CBSP35520 551 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 GRIA3P42263 894 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 RPS18P62269 152 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PDIA2Q13087 525 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 FRG1Q14331 258 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 SF1Q15637 639 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PTCHD3Q3KNS1 767 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 FAM198BQ6UWH4 519 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 CYHR1Q6ZMK1 362 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 ZNF572Q7Z3I7 529 aaPredicted RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PIWIL4Q7Z3Z4 852 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 MAATS1Q7Z4T9 603 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 ANKMY2Q8IV38 441 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 SYTL1Q8IYJ3 562 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 GPR135Q8IZ08 494 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 BBOF1Q8ND07 529 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 FBXO36Q8NEA4 188 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 OR2L3Q8NG85 312 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 OR2A1Q8NGT9 310 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 ASB11Q8WXH4 323 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 N4BP2L2Q92802 583 aaPredicted RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PKP4Q99569 1192 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 MIPEPQ99797 713 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 ERP44Q9BS26 406 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 GPR87Q9BY21 358 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 SPRTNQ9H040 489 aaPredicted RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 DPH5Q9H2P9 285 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 PPANQ9NQ55 473 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 INTS7Q9NVH2 962 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 GRHL1Q9NZI5 618 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 TRMT6Q9UJA5 497 aaKnown RBP12.53□□□□□ -0.4
CNOT1-220ENST00000569916 KLK4Q9Y5K2 254 aa12.53□□□□□ -0.4
CNOT1-220ENST00000569916 GFYI3L273 518 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 ZSCAN9O15535 394 aaPredicted RBP12.52□□□□□ -0.41
CNOT1-220ENST00000569916 NRP2O60462 931 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 RECKO95980 971 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 CAPN1P07384 714 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 HBQ1P09105 142 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 MCM3P25205 808 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 GCGRP47871 477 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 PNLIPRP1P54315 467 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 CDKN2DP55273 166 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 POLE2P56282 527 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 YBX1P67809 324 aaKnown RBP12.52□□□□□ -0.41
CNOT1-220ENST00000569916 C19orf57Q0VDD7 668 aa12.52□□□□□ -0.41
CNOT1-220ENST00000569916 CALCOCO2Q13137 446 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms