RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 BOLLQ8N9W6 283 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 FANCBQ8NB91 859 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 MCUQ8NE86 351 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SPATA4Q8NEY3 305 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 OR8K5Q8NH50 307 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RP9Q8TA86 221 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 HTR3CQ8WXA8 447 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DDX17Q92841 729 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 PHKBQ93100 1093 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ISOC1Q96CN7 298 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC25A36Q96CQ1 311 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 LRRC39Q96DD0 335 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 C1GALT1C1Q96EU7 318 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PGM2Q96G03 612 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 APOPT1Q96IL0 206 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF845Q96IR2 970 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 C9orf72Q96LT7 481 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 CCDC17Q96LX7 622 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PPM1MQ96MI6 270 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FOPNLQ96NB1 174 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF558Q96NG5 402 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PIGSQ96S52 555 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 STRBPQ96SI9 672 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 DOK1Q99704 481 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NUDT16L1Q9BRJ7 211 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 LRRC1Q9BTT6 524 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF416Q9BWM5 594 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC26A6Q9BXS9 759 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ACTRT3Q9BYD9 372 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 FRMD8P1Q9BZ68 369 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 OR51V1Q9H2C8 321 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 C17orf75Q9HAS0 396 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GPR35Q9HC97 309 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TCF7L1Q9HCS4 588 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 NMRK2Q9NPI5 230 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 AGPAT3Q9NRZ7 376 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RGS18Q9NS28 235 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 UFSP2Q9NUQ7 469 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ACOXLQ9NUZ1 547 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ASB6Q9NWX5 421 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 THUMPD1Q9NXG2 353 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 B3GNT2Q9NY97 397 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TAS2R1Q9NYW7 299 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SMARCAL1Q9NZC9 954 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GLTPQ9NZD2 209 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 MAT2BQ9NZL9 334 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 TMEM9Q9P0T7 183 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PSMC3IPQ9P2W1 217 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ENPP5Q9UJA9 477 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 DBNLQ9UJU6 430 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF221Q9UK13 617 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 RAB23Q9ULC3 237 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SNX12Q9UMY4 172 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PACSIN2Q9UNF0 486 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ST3GAL5Q9UNP4 418 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 COPS3Q9UNS2 423 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 GDAQ9Y2T3 454 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.19□□□□□ -1.9
VPS35-208ENST00000568612 PPIL1Q9Y3C6 166 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 HYOU1Q9Y4L1 999 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ASB4Q9Y574 426 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 SLC22A7Q9Y694 548 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 PIK3C2AO00443 1686 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 MYO5AQ9Y4I1 1855 aaKnown RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 ASTN2O75129 1339 aaPredicted RBP3.19□□□□□ -1.9
VPS35-208ENST00000568612 UBE4BO95155 1302 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ADGRA3Q8IWK6 1321 aa3.19□□□□□ -1.9
VPS35-208ENST00000568612 ZNF142P52746 1687 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 NEURL4Q96JN8 1562 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 DISP3Q9P2K9 1392 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 A0A1B0GVC2 190 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RGSL1A5PLK6 1076 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 LINC00862A6NCI5 91 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 LEUTXA8MZ59 168 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 KBTBD13C9JR72 458 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 PSMD12O00232 456 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 CLDN4O14493 209 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TSPAN4O14817 238 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 AIM2O14862 343 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TFECO14948 347 aaPredicted RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 ZBTB5O15062 677 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 ANGPT2O15123 496 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SLC31A2O15432 143 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MPPED1O15442 326 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HCRTR2O43614 444 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HS6ST1O60243 411 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 SNAP91O60641 907 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 UGDHO60701 494 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 KERAO60938 352 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TADA2AO75478 443 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HEXIM1O94992 359 aaKnown RBP3.18□□□□□ -1.9
VPS35-208ENST00000568612 OAZ2O95190 189 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 HSPA4LO95757 839 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 AGTP01019 485 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 MBP02144 154 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 TNNC2P02585 160 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 IFNA4P05014 189 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 GALTP07902 379 aa3.18□□□□□ -1.9
VPS35-208ENST00000568612 RHOP08100 348 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms