RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ASZ1Q8WWH4 475 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 FKBP10Q96AY3 582 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 WDR77Q9BQA1 342 aaPredicted RBP16.17■□□□□ 0.18
CLN3-211ENST00000564091 CTSFQ9UBX1 484 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 NOVA2Q9UNW9 492 aaKnown RBP16.17■□□□□ 0.18
CLN3-211ENST00000564091 HS3ST3B1Q9Y662 390 aa16.17■□□□□ 0.18
CLN3-211ENST00000564091 POLEQ07864 2286 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 F8W8V4 182 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 DSCR3O14972 297 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 SUN1O94901 812 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 ONECUT2O95948 504 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 S1PR4O95977 384 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 IFNB1P01574 187 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 ALBP02768 609 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 ADRA1DP25100 572 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 FASTKD1Q53R41 847 aaKnown RBP16.16■□□□□ 0.18
CLN3-211ENST00000564091 AGAP7PQ5VUJ5 663 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 KIAA1328Q86T90 577 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 OR2L8Q8NGY9 312 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 DNAJB14Q8TBM8 379 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 NACC2Q96BF6 587 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 SLC22A18Q96BI1 424 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 AGAP4Q96P64 663 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 MESP1Q9BRJ9 268 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 CARD6Q9BX69 1037 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 AGPAT4Q9NRZ5 378 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 SLC39A10Q9ULF5 831 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 MAU2Q9Y6X3 613 aa16.16■□□□□ 0.18
CLN3-211ENST00000564091 KRT87PA6NCN2 255 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 ERI2A8K979 691 aaKnown RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 MIF4GDA9UHW6 222 aaKnown RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 SLCO2B1O94956 709 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 RPN2P04844 631 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 APOA4P06727 396 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 PIM1P11309 404 aaPredicted RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 ETS1P14921 441 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 ZNF75DP51815 510 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 PRAMEP78395 509 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 ACVR1Q04771 509 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 GRM7Q14831 915 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 CCSMST1Q4G0I0 132 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 ZC3H12BQ5HYM0 836 aaKnown RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 KCNMB4Q86W47 210 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 DENND1AQ8TEH3 1009 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 PPP4R1Q8TF05 950 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 CNDP1Q96KN2 507 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 SELENOSQ9BQE4 189 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 TSSK1BQ9BXA7 367 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 SLC26A1Q9H2B4 701 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 WDR54Q9H977 334 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 INTS7Q9NVH2 962 aaKnown RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 MARCH4Q9P2E8 410 aaPredicted RBP16.15■□□□□ 0.18
CLN3-211ENST00000564091 RIMKLBQ9ULI2 386 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 TCAF1Q9Y4C2 921 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 PIKFYVEQ9Y2I7 2098 aa16.15■□□□□ 0.18
CLN3-211ENST00000564091 CRYBG3Q68DQ2 2970 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 E7EVH7 732 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 RASGRF2O14827 1237 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 PRICKLE3O43900 615 aaPredicted RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 CTSVO60911 334 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 MED26O95402 600 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 AOAHP28039 575 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 STIP1P31948 543 aaKnown RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 FDFT1P37268 417 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 VSX2P58304 361 aaPredicted RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 Q0VFX4 171 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 OASLQ15646 514 aaKnown RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 RBBP7Q16576 425 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 TCTE1Q5JU00 501 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 WASHC2DQ5SRD0 308 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 IGFL2Q6UWQ7 119 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 UNC5DQ6UXZ4 953 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 PRSS58Q8IYP2 241 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 SYCE1Q8N0S2 351 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 TTC29Q8NA56 475 aaPredicted RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 ST6GALNAC3Q8NDV1 305 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 GRHL3Q8TE85 626 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 ZNF285Q96NJ3 590 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 RAB6BQ9NRW1 208 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 STOX2Q9P2F5 926 aaPredicted RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 RUVBL2Q9Y230 463 aaKnown RBP16.14■□□□□ 0.17
CLN3-211ENST00000564091 NFS1Q9Y697 457 aa16.14■□□□□ 0.17
CLN3-211ENST00000564091 VSTM2BA6NLU5 285 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 PRMT5O14744 637 aaPredicted RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 LIASO43766 372 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 NRP2O60462 931 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 PSMB5P28074 263 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 PPARGP37231 505 aaPredicted RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 BDKRB1P46663 353 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 KIF5AQ12840 1032 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 TUBB8Q3ZCM7 444 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 IRAK1BP1Q5VVH5 260 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 YOD1Q5VVQ6 348 aaPredicted RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 PTRHD1Q6GMV3 140 aaKnown RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 FRMPD2BQ6IN97 320 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 LINC00696Q6ZRV3 163 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 NLRP9Q7RTR0 991 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 OR11G2Q8NGC1 345 aa16.13■□□□□ 0.17
CLN3-211ENST00000564091 SKA2Q8WVK7 121 aaPredicted RBP16.13■□□□□ 0.17
CLN3-211ENST00000564091 C1orf54Q8WWF1 131 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms