RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LONRF1Q17RB8 773 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 TTLL9Q3SXZ7 439 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 C1orf189Q5VU69 101 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 ZNF385CQ66K41 422 aaPredicted RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 RAB43Q86YS6 212 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 MCATQ8IVS2 390 aaKnown RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 NAT8LQ8N9F0 302 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 LMNTD1Q8N9Z9 388 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 TEX19Q8NA77 164 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 ZUFSPQ96AP4 578 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 FAM136AQ96C01 138 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 ING2Q9H160 280 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 FAM114A2Q9NRY5 505 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 C20orf96Q9NUD7 363 aaPredicted RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 SPATA7Q9P0W8 599 aa16.2■□□□□ 0.18
CLK3-210ENST00000563112 IFT80Q9P2H3 777 aaPredicted RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 TSR3Q9UJK0 312 aaKnown RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 G3BP2Q9UN86 482 aaKnown RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 RUVBL2Q9Y230 463 aaKnown RBP16.2■□□□□ 0.18
CLK3-210ENST00000563112 TARM1B6A8C7 271 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 DNAJB5O75953 348 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 USP1O94782 785 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 MATN4O95460 622 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 TCP1P17987 556 aaKnown RBP16.19■□□□□ 0.18
CLK3-210ENST00000563112 PTGIRP43119 386 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 ARSFP54793 590 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 CCSMST1Q4G0I0 132 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 TCTE1Q5JU00 501 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 GABPB2Q8TAK5 448 aaPredicted RBP16.19■□□□□ 0.18
CLK3-210ENST00000563112 HMGCLL1Q8TB92 370 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 ADAMTS17Q8TE56 1095 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 IP6K3Q96PC2 410 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 GBP5Q96PP8 586 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 TRIM56Q9BRZ2 755 aaKnown RBP16.19■□□□□ 0.18
CLK3-210ENST00000563112 SLC25A23Q9BV35 468 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 TRIM55Q9BYV6 548 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 IL1RAPL1Q9NZN1 696 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 DHCR7Q9UBM7 475 aaKnown RBP16.19■□□□□ 0.18
CLK3-210ENST00000563112 ASIC3Q9UHC3 531 aa16.19■□□□□ 0.18
CLK3-210ENST00000563112 UBR5O95071 2799 aaPredicted RBP16.19■□□□□ 0.18
CLK3-210ENST00000563112 ZCWPW2A0A1B0GU75 182 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 ZNF185O15231 689 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 CATP04040 527 aaKnown RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 ATXN8OSP0DMR3 200 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 PIM1P11309 404 aaPredicted RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 NR1D1P20393 614 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 ALAS2P22557 587 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 FOLR3P41439 243 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 MAGEA3P43357 314 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 RRADP55042 308 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 CHAF1BQ13112 559 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 CTBP1Q13363 440 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 GBX1Q14549 363 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 NAA25Q14CX7 972 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 KLHL38Q2WGJ6 581 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 ACSBG2Q5FVE4 666 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 YOD1Q5VVQ6 348 aaPredicted RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 CPZQ66K79 652 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 FCRL6Q6DN72 434 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 MED25Q71SY5 747 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 PCGF5Q86SE9 256 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 DENND6AQ8IWF6 608 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 TMEM102Q8N9M5 508 aaPredicted RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 TTC29Q8NA56 475 aaPredicted RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 OR9A1PQ8NGU1 263 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 SIGLEC10Q96LC7 697 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 MIPEPQ99797 713 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 EPN3Q9H201 632 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 KCNF1Q9H3M0 494 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 FBXO6Q9NRD1 293 aaPredicted RBP16.18■□□□□ 0.18
CLK3-210ENST00000563112 KLHL42Q9P2K6 505 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 COMMD10Q9Y6G5 202 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 NBASA2RRP1 2371 aa16.18■□□□□ 0.18
CLK3-210ENST00000563112 ZNF839A8K0R7 811 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 PRICKLE3O43900 615 aaPredicted RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 CTSBP07858 339 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 CMPK1P30085 196 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 OTX2P32243 289 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 HSD17B2P37059 387 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 GRIA3P42263 894 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 PGDP52209 483 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 SSPNQ14714 243 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 GRM7Q14831 915 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 CYP2A13Q16696 494 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 NKAIN1Q4KMZ8 207 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 RNASEH2BQ5TBB1 312 aaKnown RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 FAM69BQ5VUD6 431 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 TTLL10Q6ZVT0 673 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 NEK10Q6ZWH5 1172 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLK3-210ENST00000563112 OR2L3Q8NG85 312 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 SELENOSQ9BQE4 189 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 FAM167BQ9BTA0 163 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 DDX47Q9H0S4 455 aaKnown RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 ASH1LQ9NR48 2969 aaKnown RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 GALPQ9UBC7 116 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 FBXO5Q9UKT4 447 aa16.17■□□□□ 0.18
CLK3-210ENST00000563112 PTRH2Q9Y3E5 179 aaKnown RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 PCDHGA9Q9Y5G4 932 aaKnown RBP16.17■□□□□ 0.18
CLK3-210ENST00000563112 FAM169AQ9Y6X4 670 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms