RNA–Protein interactions for RNA: ENST00000560175.5

SMAD3-213, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-213ENST00000560175 ARL4CP56559 192 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 DNASE1L3Q13609 305 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 TTLL9Q3SXZ7 439 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 PRAMEF17Q5VTA0 474 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 FCRL6Q6DN72 434 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 TRMT10BQ6PF06 316 aaKnown RBP12.72□□□□□ -0.37
SMAD3-213ENST00000560175 CYS1Q717R9 158 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 TMEM126BQ8IUX1 230 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 CT55Q8WUE5 264 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 STARD8Q92502 1023 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 EXTL1Q92935 676 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 FAM136AQ96C01 138 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 MED8Q96G25 268 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 GPR21Q99679 349 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 DPH2Q9BQC3 489 aaPredicted RBP12.72□□□□□ -0.37
SMAD3-213ENST00000560175 MCMBPQ9BTE3 642 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 SEMA4CQ9C0C4 833 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 CCDC68Q9H2F9 335 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 PCMTD2Q9NV79 361 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 ZC3H7BQ9UGR2 993 aaKnown RBP12.72□□□□□ -0.37
SMAD3-213ENST00000560175 SLC39A10Q9ULF5 831 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 RUVBL2Q9Y230 463 aaKnown RBP12.72□□□□□ -0.37
SMAD3-213ENST00000560175 SNX24Q9Y343 169 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 AP1M2Q9Y6Q5 423 aa12.72□□□□□ -0.37
SMAD3-213ENST00000560175 MDC1Q14676 2089 aaKnown RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 ZNF749O43361 778 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 RAD51CO43502 376 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CREG1O75629 220 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 ONECUT2O95948 504 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 HBQ1P09105 142 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 RAB40ALP0C0E4 278 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 MAGP20916 626 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 PTPN4P29074 926 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 HSD17B2P37059 387 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 GRIA3P42263 894 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CARSP49589 748 aaKnown RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CDC20Q12834 499 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 LY6DQ14210 128 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 TAF1BQ53T94 588 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 LCN10Q6JVE6 187 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 RHBDD2Q6NTF9 364 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 UGT3A1Q6NUS8 523 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 FAM199XQ6PEV8 388 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 FIGLAQ6QHK4 219 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 LRRC56Q8IYG6 542 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 ZNF843Q8N446 348 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 KLHL25Q9H0H3 589 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 ACTR5Q9H9F9 607 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 FAM114A2Q9NRY5 505 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 GRHL1Q9NZI5 618 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CIDEBQ9UHD4 219 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CORO1CQ9ULV4 474 aaPredicted RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 PLCL2Q9UPR0 1127 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 CHMP2BQ9UQN3 213 aa12.71□□□□□ -0.37
SMAD3-213ENST00000560175 MRPS18BQ9Y676 258 aaKnown RBP12.71□□□□□ -0.37
SMAD3-213ENST00000560175 KRT87PA6NCN2 255 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 E7EQ34 232 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 EIF3HO15372 352 aaKnown RBP eCLIP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 VPS26AO75436 327 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 CATP04040 527 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 KLK3P07288 261 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 CTSBP07858 339 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 FURINP09958 794 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 RELAQ04206 551 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 PDIA2Q13087 525 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 FASTKQ14296 549 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 FASTKD3Q14CZ7 662 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 SF1Q15637 639 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 LRRC8EQ6NSJ5 796 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 TLDC1Q6P9B6 456 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 BORAQ6PGQ7 559 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 MCATQ8IVS2 390 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 SPNS2Q8IVW8 549 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 FAM20CQ8IXL6 584 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 RAB42Q8N4Z0 105 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 C2orf73Q8N5S3 287 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 OR2L3Q8NG85 312 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 SKA2Q8WVK7 121 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 SEC14L1Q92503 715 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 DLG3Q92796 817 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 RNF31Q96EP0 1072 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 PDLIM5Q96HC4 596 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 PKP4Q99569 1192 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 NLNQ9BYT8 704 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 TRIM31Q9BZY9 425 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 PHACTR1Q9C0D0 580 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 SPRTNQ9H040 489 aaPredicted RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 CHST8Q9H2A9 424 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 ADNPQ9H2P0 1102 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 INTS7Q9NVH2 962 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 WDR70Q9NW82 654 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 GEMIN8Q9NWZ8 242 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 EURLQ9NYK6 297 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 TAS2R13Q9NYV9 303 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 TUBD1Q9UJT1 453 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 CDC23Q9UJX2 597 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 FARSAQ9Y285 508 aaKnown RBP12.7□□□□□ -0.38
SMAD3-213ENST00000560175 MED13Q9UHV7 2174 aa12.7□□□□□ -0.38
SMAD3-213ENST00000560175 OR2A25A4D2G3 310 aa12.69□□□□□ -0.38
SMAD3-213ENST00000560175 FITM1A5D6W6 292 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms