RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 PTGIRP43119 386 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 FNTAP49354 379 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 PGGT1BP53609 377 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 DHX9Q08211 1270 aaKnown RBP12.04□□□□□ -0.48
SMAD3-208ENST00000558827 RAPSNQ13702 412 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.04□□□□□ -0.48
SMAD3-208ENST00000558827 RNASEH2BQ5TBB1 312 aaKnown RBP12.04□□□□□ -0.48
SMAD3-208ENST00000558827 IZUMO3Q5VZ72 239 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 FAM198BQ6UWH4 519 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 SUSD1Q6UWL2 747 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 ATG14Q6ZNE5 492 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 IGDCC3Q8IVU1 814 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 C17orf53Q8N3J3 647 aaPredicted RBP12.04□□□□□ -0.48
SMAD3-208ENST00000558827 PPFIBP2Q8ND30 876 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 GIMAP7Q8NHV1 300 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 DENND1AQ8TEH3 1009 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.04□□□□□ -0.48
SMAD3-208ENST00000558827 RAD51AP1Q96B01 352 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 FOPNLQ96NB1 174 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 TCF12Q99081 682 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 NDNQ99608 321 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 TRIM51Q9BSJ1 452 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 TRIM31Q9BZY9 425 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 SYTL2Q9HCH5 934 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 EURLQ9NYK6 297 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 PLCL2Q9UPR0 1127 aa12.04□□□□□ -0.48
SMAD3-208ENST00000558827 A0A0J9YVX5 310 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 MAGEB16A2A368 324 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 DNALI1O14645 258 aaPredicted RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 KPNA5O15131 536 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 PFDN6O15212 129 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 ZSCAN9O15535 394 aaPredicted RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 USP1O94782 785 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 PDGFAP04085 211 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 AGXTP21549 392 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 IGFBP7Q16270 282 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 UGT8Q16880 541 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 LONRF1Q17RB8 773 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 LACTB2Q53H82 288 aaPredicted RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 RNF187Q5TA31 235 aaPredicted RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 TTLL10Q6ZVT0 673 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 SYVN1Q86TM6 617 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 ANP32BQ92688 251 aaKnown RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 CFAP36Q96G28 342 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 LRFN5Q96NI6 719 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 PKP4Q99569 1192 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 GPR21Q99679 349 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 NLNQ9BYT8 704 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 CCDC68Q9H2F9 335 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 TXLNGQ9NUQ3 528 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 GPN3Q9UHW5 284 aaPredicted RBP12.03□□□□□ -0.48
SMAD3-208ENST00000558827 FBXO5Q9UKT4 447 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 TCFL5Q9UL49 500 aa12.03□□□□□ -0.48
SMAD3-208ENST00000558827 BSNQ9UPA5 3926 aa12.02□□□□□ -0.48
SMAD3-208ENST00000558827 FLNBO75369 2602 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 A0A1W2PPV9 198 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 C9J4A7 227 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 H3BMH7 237 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 H3BMM5 538 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 MKRN2OSH3BPM6 223 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 PRICKLE3O43900 615 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CTSVO60911 334 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CNOT3O75175 753 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 RFPL1O75677 317 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 EIF2S1P05198 315 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 TCP1P17987 556 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 MAGEA3P43357 314 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CARSP49589 748 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CLCN7P51798 805 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 PMS2P54278 862 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 VSX2P58304 361 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 TLE1Q04724 770 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 PTK6Q13882 451 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 NCF4Q15080 339 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CRTC2Q53ET0 693 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ZNF385CQ66K41 422 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ZNF517Q6ZMY9 492 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 SHISA6Q6ZSJ9 500 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ASB18Q6ZVZ8 466 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 KCNMB4Q86W47 210 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CREG2Q8IUH2 290 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ANKMY2Q8IV38 441 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 CPNE9Q8IYJ1 553 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 OR9A1PQ8NGU1 263 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 GBP5Q96PP8 586 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 NAPGQ99747 312 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 NDC1Q9BTX1 674 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ING2Q9H160 280 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 EPN3Q9H201 632 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 ACSS2Q9NR19 701 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 INTS10Q9NVR2 710 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 IFT80Q9P2H3 777 aaPredicted RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 MED16Q9Y2X0 877 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 PTRH2Q9Y3E5 179 aaKnown RBP12.02□□□□□ -0.49
SMAD3-208ENST00000558827 FAM169AQ9Y6X4 670 aa12.02□□□□□ -0.49
SMAD3-208ENST00000558827 MYO18BQ8IUG5 2567 aa12.01□□□□□ -0.49
SMAD3-208ENST00000558827 LOC105369274A0A096LPK9 316 aa12.01□□□□□ -0.49
SMAD3-208ENST00000558827 LOC102723532A0A0G2JNH3 316 aa12.01□□□□□ -0.49
SMAD3-208ENST00000558827 FANCGO15287 622 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms