RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 RUNDC3AQ59EK9 446 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 SPANXN4Q5MJ08 99 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 CCNYL2Q5T2Q4 361 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 LRIF1Q5T3J3 769 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 TTC23Q5W5X9 447 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 GDPD4Q6W3E5 623 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 USP51Q70EK9 711 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 GET4Q7L5D6 327 aaPredicted RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 NECAB2Q7Z6G3 386 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 RALGPS2Q86X27 583 aaPredicted RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 ZDHHC13Q8IUH4 622 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 ERI1Q8IV48 349 aaKnown RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 MICU2Q8IYU8 434 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 TTC16Q8NEE8 873 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 ZNF420Q8TAQ5 688 aaPredicted RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 FAM110BQ8TC76 370 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 MAGEE2Q8TD90 523 aaPredicted RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 MCOLN3Q8TDD5 553 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 ATL1Q8WXF7 558 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 NELL1Q92832 810 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 SLC47A1Q96FL8 570 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 METTL2AQ96IZ6 378 aaKnown RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 ZNF583Q96ND8 569 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 OR52E6Q96RD3 313 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 HBEGFQ99075 208 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 THUMPD3Q9BV44 507 aaKnown RBP7.09□□□□□ -1.28
VPS13C-206ENST00000558338 TRIM8Q9BZR9 551 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 RNF208Q9H0X6 261 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 NEUROD4Q9HD90 331 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 DNAJC11Q9NVH1 559 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 VAPAQ9P0L0 249 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 TBC1D14Q9P2M4 693 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 PDE10AQ9Y233 779 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 INVSQ9Y283 1065 aa7.09□□□□□ -1.28
VPS13C-206ENST00000558338 PLXNA2O75051 1894 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 KCNE1BA0A087WTH5 132 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 TRBV5-3A0A0A0MS03 114 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 A0A1W2PRU2 124 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 TSPAN11A1L157 253 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 PLOD2O00469 737 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CXCR6O00574 342 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 WNT9AO14904 365 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 DFNA5O60443 496 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 NOL3O60936 208 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 TRMUO75648 421 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FGF18O76093 207 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 UGT2B4P06133 528 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 THRBP10828 461 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 HSD3B1P14060 373 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 POU3F3P20264 500 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 LHCGRP22888 699 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 HLA-FP30511 346 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CCR7P32248 378 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CA5AP35218 305 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 NNMTP40261 264 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 MTHFRP42898 656 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 GDF5P43026 501 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 STK19P49842 368 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 PNLIPRP1P54315 467 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 PRSS12P56730 875 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 NUP107P57740 925 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ADARB1P78563 741 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 DEFB103AP81534 67 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 HMGCS1Q01581 520 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ABHD18Q0P651 414 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ABRQ12979 859 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 SELPLGQ14242 412 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 RFX4Q33E94 735 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CYBRD1Q53TN4 286 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 LIPJQ5W064 366 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FAM117BQ6P1L5 589 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ISLR2Q6UXK2 745 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 GPR149Q86SP6 731 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ADHFE1Q8IWW8 467 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ADGRG2Q8IZP9 1017 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CMTM8Q8IZV2 173 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 EID3Q8N140 333 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CLEC4FQ8N1N0 589 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 TRAM1L1Q8N609 369 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 KREMEN2Q8NCW0 462 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ZNF555Q8NEP9 628 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 HCAR2Q8TDS4 363 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 SKA2Q8WVK7 121 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ASZ1Q8WWH4 475 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ASB11Q8WXH4 323 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FIG4Q92562 907 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FBXL8Q96CD0 374 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FAM120BQ96EK7 910 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 AURKBQ96GD4 344 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CNDP2Q96KP4 475 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 RPL10LQ96L21 214 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 FCRL1Q96LA6 429 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 RBM4BQ9BQ04 359 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 TUBA1CQ9BQE3 449 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 CPPED1Q9BRF8 314 aaPredicted RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 RBM4Q9BWF3 364 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 OSBPL10Q9BXB5 764 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ACPTQ9BZG2 426 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 BRD9Q9H8M2 597 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ZFP14Q9HCL3 533 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms