RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 CRTC2Q53ET0 693 aaPredicted RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 DUS1LQ6P1R4 473 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 SPESP1Q6UW49 350 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 C6orf89Q6UWU4 347 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 CAND1Q86VP6 1230 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 CREG2Q8IUH2 290 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 ARFGAP2Q8N6H7 521 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 LPGAT1Q92604 370 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 DLG3Q92796 817 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 INPP5DQ92835 1189 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 NKD1Q969G9 470 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 ZNF778Q96MU6 729 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 RUFY1Q96T51 708 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 EBNA1BP2Q99848 306 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 CTRCQ99895 268 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 P2RY12Q9H244 342 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 SIDT1Q9NXL6 827 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 TAS2R13Q9NYV9 303 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 ZC3H7BQ9UGR2 993 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 TRMT6Q9UJA5 497 aaKnown RBP8.39□□□□□ -1.07
USP3-208ENST00000558285 PILRAQ9UKJ1 303 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 CRYL1Q9Y2S2 319 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 NEU2Q9Y3R4 380 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 PRSS21Q9Y6M0 314 aa8.39□□□□□ -1.07
USP3-208ENST00000558285 BTN3A1O00481 513 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 RASGRF2O14827 1237 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 EFSO43281 561 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 AVILO75366 819 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 SPAG6O75602 509 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 TMEM63AO94886 807 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 FAM107AO95990 144 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 IGHEP01854 428 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 CHRM5P08912 532 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 HIST1H2AGP0C0S8 130 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 PRSS56P0CW18 603 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 IMPDH2P12268 514 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 TCN2P20062 427 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 HIST1H2ADP20671 130 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 CD9P21926 228 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 MAGEA3P43357 314 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 CCR10P46092 362 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 ITGA1P56199 1179 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 ROR2Q01974 943 aaKnown RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 ABRQ12979 859 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 KYNUQ16719 465 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 YOD1Q5VVQ6 348 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 ANKRD22Q5VYY1 191 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 GALNT7Q86SF2 657 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 TEX9Q8N6V9 391 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 OR5AR1Q8NGP9 310 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 OR2L8Q8NGY9 312 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 AENQ8WTP8 325 aaKnown RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 CAVIN3Q969G5 261 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 CLIP3Q96DZ5 547 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 SPDL1Q96EA4 605 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 VPS39Q96JC1 886 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 SLC45A3Q96JT2 553 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 HIST1H2AHQ96KK5 128 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 LRFN5Q96NI6 719 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 HIST1H2AJQ99878 128 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 H2AFJQ9BTM1 129 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 PITPNM3Q9BZ71 974 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 CPNE5Q9HCH3 593 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 TXLNGQ9NUQ3 528 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 ZFATQ9P243 1243 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 MARCH4Q9P2E8 410 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 GPN3Q9UHW5 284 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 FBXO5Q9UKT4 447 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 USP24Q9UPU5 2620 aa8.38□□□□□ -1.07
USP3-208ENST00000558285 ANKRD11Q6UB99 2663 aaPredicted RBP8.38□□□□□ -1.07
USP3-208ENST00000558285 IGHV5-51A0A0C4DH38 117 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TCRBV7S3A2A0A539 114 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 SLC9B1P1A6NJY1 282 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 BHMG1C9JSJ3 638 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 DLGAP3O95886 979 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 GSTA1P08263 222 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 MPC1LP0DKB6 136 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CMPK1P30085 196 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 PKLRP30613 574 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CA5AP35218 305 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 DLSTP36957 453 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 STAT5AP42229 794 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ARCN1P48444 511 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 KPNA2P52292 529 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 ARSFP54793 590 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 SLC12A2P55011 1212 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 C19orf57Q0VDD7 668 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 FRG1Q14331 258 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 SF1Q15637 639 aaKnown RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 HSP90AA5PQ58FG0 334 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TCTE1Q5JU00 501 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 BORAQ6PGQ7 559 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 CES3Q6UWW8 571 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 UNC5AQ6ZN44 842 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 ZNF572Q7Z3I7 529 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 LDB1Q86U70 411 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 MYO1HQ8N1T3 1032 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 TBC1D19Q8N5T2 526 aa8.37□□□□□ -1.07
USP3-208ENST00000558285 LILRA3Q8N6C8 439 aaPredicted RBP8.37□□□□□ -1.07
USP3-208ENST00000558285 C19orf47Q8N9M1 422 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms