RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	MRGPRG	Q86SM5	289 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	KBTBD2	Q8IY47	623 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	C2orf73	Q8N5S3	287 aa	Predicted RBP	12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	TTC29	Q8NA56	475 aa	Predicted RBP	12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	CCDC110	Q8TBZ0	833 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	NR4A3	Q92570	626 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	HAS2	Q92819	552 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	LURAP1	Q96LR2	239 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	CRB3	Q9BUF7	120 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF160	Q9HCG1	818 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	CTSF	Q9UBX1	484 aa		12.12	□□□□□ -0.47
SHMT2-223	ENST00000556689	TRAV17	A0A0B4J275	112 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	TRGV8	A0A0C4DH27	118 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689		F8W8V4	182 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	CCL21	O00585	134 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	SRPX2	O60687	465 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	USP1	O94782	785 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	S1PR4	O95977	384 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	SNRPB2	P08579	225 aa	Known RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	OR56A5	P0C7T3	313 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	RBP3	P10745	1247 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	CD9	P21926	228 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	MCM3	P25205	808 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	CTNNA2	P26232	953 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	CDC25B	P30305	580 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	PKLR	P30613	574 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF75D	P51815	510 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	TDGF1P3	P51864	188 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	HADHB	P55084	474 aa	Known RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	EIF3E	P60228	445 aa	Known RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	COPS2	P61201	443 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	OCA2	Q04671	838 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	SF1	Q15637	639 aa	Known RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	INA	Q16352	499 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF630	Q2M218	657 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	DNAJC21	Q5F1R6	531 aa	Known RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	VWA2	Q5GFL6	755 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ATG9B	Q674R7	924 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	MTFR2	Q6P444	385 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	BNC2	Q6ZN30	1099 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	CDKL3	Q8IVW4	592 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF808	Q8N4W9	903 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	METTL27	Q8N6F8	245 aa	Predicted RBP	12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ACTL9	Q8TC94	416 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZUFSP	Q96AP4	578 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	SPATA13	Q96N96	652 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	TAAR6	Q96RI8	345 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	SELENOS	Q9BQE4	189 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	GOLPH3	Q9H4A6	298 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF304	Q9HCX3	659 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ENAM	Q9NRM1	1142 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	ABHD10	Q9NUJ1	306 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	PLA2G3	Q9NZ20	509 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	PTGFRN	Q9P2B2	879 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	IMPACT	Q9P2X3	320 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	MAU2	Q9Y6X3	613 aa		12.11	□□□□□ -0.47
SHMT2-223	ENST00000556689	FER1L5	A0AVI2	2057 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ANKRD12	Q6UB98	2062 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ANKRD17	O75179	2603 aa	Known RBP	12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	NSG1	A0A0A6YYJ2	146 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	FITM1	A5D6W6	292 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	TARM1	B6A8C7	271 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	MAP2K7	O14733	419 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	RPN2	P04844	631 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	PTMA	P06454	111 aa	Known RBP	12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZGLP1	P0C6A0	271 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	COX6B1	P14854	86 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ACPP	P15309	386 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	FDXR	P22570	491 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	MARCKSL1	P49006	195 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	TNFSF10	P50591	281 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	CSE1L	P55060	971 aa	Known RBP	12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	KLC1	Q07866	573 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	POU6F1	Q14863	301 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	WASHC2D	Q5SRD0	308 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	XKRX	Q6PP77	449 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	PACS1	Q6VY07	963 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	RPTN	Q6XPR3	784 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	NLRP9	Q7RTR0	991 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	KLHDC8B	Q8IXV7	354 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	LINC01555	Q8NAE3	123 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	DNAJB8	Q8NHS0	232 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	STT3B	Q8TCJ2	826 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	KRT35	Q92764	455 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	MIEF2	Q96C03	454 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	CCDC120	Q96HB5	630 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF285	Q96NJ3	590 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	TTC1	Q99614	292 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZNF282	Q9UDV7	671 aa	Predicted RBP	12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	C3orf18	Q9UK00	162 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ITGB1BP2	Q9UKP3	347 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	EFR3B	Q9Y2G0	817 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ZGRF1	Q86YA3	2104 aa		12.1	□□□□□ -0.47
SHMT2-223	ENST00000556689	ADGRG4	Q8IZF6	3080 aa		12.09	□□□□□ -0.47
SHMT2-223	ENST00000556689	PDZD2	O15018	2839 aa		12.09	□□□□□ -0.47
SHMT2-223	ENST00000556689	MACROD2	A1Z1Q3	448 aa		12.09	□□□□□ -0.47
SHMT2-223	ENST00000556689	HYKK	A2RU49	373 aa		12.09	□□□□□ -0.47
SHMT2-223	ENST00000556689	KRT38	O76015	456 aa		12.09	□□□□□ -0.47
SHMT2-223	ENST00000556689	UNC5C	O95185	931 aa		12.09	□□□□□ -0.47

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