RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RAMP2O60895 175 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ATP6AP2O75787 350 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE7O76087 117 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 WDPCPO95876 746 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 LCATP04180 440 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ADRB1P08588 477 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE12FP0CL80 117 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE12GP0CL81 117 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE12IP0CL82 117 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 STAG3L1P0CL83 205 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 NR1D1P20393 614 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ACP1P24666 158 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 CHRNA3P32297 505 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 RPL21P46778 160 aaKnown RBP5.48□□□□□ -1.53
SCFD1-208ENST00000553278 EEF1A2Q05639 463 aaKnown RBP5.48□□□□□ -1.53
SCFD1-208ENST00000553278 PPP1R8Q12972 351 aaKnown RBP5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE1Q13065 139 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GAGE4Q13068 117 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 PTGR1Q14914 329 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM35AQ53FP2 167 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 CCNYL2Q5T2Q4 361 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 CCNI2Q6ZMN8 369 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ZNF704Q6ZNC4 412 aaPredicted RBP5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ZNF788Q6ZQV5 615 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 C1orf186Q6ZWK4 172 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GLCCI1Q86VQ1 547 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ZNF34Q8IZ26 560 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 APCDD1Q8J025 514 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 GBGT1Q8N5D6 347 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 PCYT2Q99447 389 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 ZNF747Q9BV97 191 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 CDK19Q9BWU1 502 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 IDI2Q9BXS1 227 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 NGBQ9NPG2 151 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 SLC35D1Q9NTN3 355 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 LRWD1Q9UFC0 647 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 AMDHD2Q9Y303 409 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 SNX9Q9Y5X1 595 aa5.48□□□□□ -1.53
SCFD1-208ENST00000553278 A0A0B4J203 849 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 KPNA7A9QM74 516 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PRR32B1ATL7 298 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM150CB9EJG8 249 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 E5RJQ4 531 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TLR4O00206 839 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 SNX3O60493 162 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 RFPL2O75678 378 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 EPN2O95208 641 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PDGFBP01127 241 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TPM2P07951 284 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 CPA3P15088 417 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 SCP2P22307 547 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 C21orf33P30042 268 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 ADSSP30520 456 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 CORO1AP31146 461 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 ELLP55199 621 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PROK1P58294 105 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 SRP54P61011 504 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 SLC34A1Q06495 639 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TRAF1Q13077 416 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 FASTKD1Q53R41 847 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 FNBP1LQ5T0N5 605 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 OR6B2Q6IFH4 312 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 FAM122CQ6P4D5 195 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 KDELC1Q6UW63 502 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TAF8Q7Z7C8 310 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 NUDT13Q86X67 352 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM126BQ8IUX1 230 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 C1orf87Q8N0U7 546 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM199Q8N511 208 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 BMPERQ8N8U9 685 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 RDM1Q8NG50 284 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PRSS3P2Q8NHM4 247 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 RNF128Q8TEB7 428 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PHF21AQ96BD5 680 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PYCR2Q96C36 320 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 MRPL38Q96DV4 380 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 ALG14Q96F25 216 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 C14orf79Q96F83 325 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PGM2Q96G03 612 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 EPSTI1Q96J88 318 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PANK2Q9BZ23 570 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TMEM245Q9H330 911 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PLAC1Q9HBJ0 212 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 ACKR4Q9NPB9 350 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 ZCCHC3Q9NUD5 404 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TCP11L1Q9NUJ3 509 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 AATFQ9NY61 560 aaKnown RBP eCLIP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 TUBA8Q9NY65 449 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 DNPEPQ9ULA0 475 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 RUVBL2Q9Y230 463 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 FOXA2Q9Y261 457 aaPredicted RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 RRP15Q9Y3B9 282 aaKnown RBP5.47□□□□□ -1.53
SCFD1-208ENST00000553278 PCDH11YQ9BZA8 1340 aa5.47□□□□□ -1.53
SCFD1-208ENST00000553278 KRTAP9-7A8MTY7 169 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 MAGEB2O15479 319 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 TEX28O15482 410 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 OR6B1O95007 311 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 AKR7A3O95154 331 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 CXCL14O95715 111 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PTBP3O95758 552 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms