RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 WASH2PQ6VEQ5 465 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ERMP1Q7Z2K6 904 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SPATA19Q7Z5L4 167 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ADIPOR2Q86V24 386 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 EPHX4Q8IUS5 362 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 HID1Q8IV36 788 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 CHPFQ8IZ52 775 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 FRMD1Q8N878 549 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 MRPL43Q8N983 215 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RASGEF1AQ8N9B8 481 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 BPIFB6Q8NFQ5 453 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 OVCA2Q8WZ82 227 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RSPRY1Q96DX4 576 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PPP3R2Q96LZ3 170 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 CCDC138Q96M89 665 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 REXO4Q9GZR2 422 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 KLHL25Q9H0H3 589 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RIBC2Q9H4K1 309 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 FZD3Q9NPG1 666 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 MRPL40Q9NQ50 206 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 DYRK4Q9NR20 520 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RASSF1Q9NS23 344 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 DNAJC11Q9NVH1 559 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 C1orf109Q9NX04 203 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PTBP2Q9UKA9 531 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ASF1AQ9Y294 204 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 INSL6Q9Y581 213 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PCDHB14Q9Y5E9 798 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PRAMEF33A0A0G2JMD5 474 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ARHGEF33A8MVX0 844 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 MAGEB17A8MXT2 336 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 KPNA5O15131 536 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SLC31A1O15431 190 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 FTH1P02794 183 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ANXA6P08133 673 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 LAMP1P11279 417 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 POU2F1P14859 743 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 TCF3P15923 654 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 CYP2A7P20853 494 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PCSK6P29122 969 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PBX2P40425 430 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 CLCN4P51793 760 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RPS13P62277 151 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SLC14A1Q13336 389 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 DOC2AQ14183 400 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PCBP2Q15366 365 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 NKG7Q16617 165 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PDE12Q6L8Q7 609 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 AGTRAPQ6RW13 159 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PARS2Q7L3T8 475 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 GPR180Q86V85 440 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 TRPV3Q8NET8 790 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SPPL3Q8TCT6 385 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 NETO1Q8TDF5 533 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SDCCAG3Q96C92 435 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF689Q96CS4 500 aaPredicted RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 TRMT2BQ96GJ1 504 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 MUS81Q96NY9 551 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 NAA50Q9GZZ1 169 aaKnown RBP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 SLC32A1Q9H598 525 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 POLR1BQ9H9Y6 1135 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 CTPS2Q9NRF8 586 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.44□□□□□ -1.54
LIMA1-215ENST00000552823 BTBD3Q9Y2F9 522 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 MYRFQ9Y2G1 1151 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 PCDHA9Q9Y5H5 950 aa5.44□□□□□ -1.54
LIMA1-215ENST00000552823 TCRBV3S1A0A5B6 114 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MGAT4DA6NG13 374 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 H0Y858 1186 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 H3BM21 787 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CXCR6O00574 342 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MOSPD3O75425 235 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 TNFAIP8O95379 198 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ETHE1O95571 254 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 BMPR1AP36894 532 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CRATP43155 626 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 OR1E2P47887 323 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ACADVLP49748 655 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RNF144AP50876 292 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RPS26P62854 115 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 POLR2LP62875 67 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 OCA2Q04671 838 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 EMX2Q04743 252 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 DGCR6Q14129 220 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 RCAN2Q14206 197 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 MEP1AQ16819 746 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ALG1LQ6GMV1 187 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CES5AQ6NT32 575 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 PSRC1Q6PGN9 363 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 Q6ZPB1 254 aaPredicted RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 LPCAT2Q7L5N7 544 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 EFL1Q7Z2Z2 1120 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ADGRG6Q86SQ4 1221 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 THOC6Q86W42 341 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ZFAND4Q86XD8 727 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 CATSPER1Q8NEC5 780 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SPPL2AQ8TCT8 520 aa5.43□□□□□ -1.54
LIMA1-215ENST00000552823 SNRNP27Q8WVK2 155 aaKnown RBP5.43□□□□□ -1.54
LIMA1-215ENST00000552823 ROPN1LQ96C74 230 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms