RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 A0A1W2PPV9 198 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CDC14CA4D256 554 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 OR2B3O76000 313 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SEC31AO94979 1220 aaKnown RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 RECKO95980 971 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CAPN1P07384 714 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 ERGP11308 486 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 PSMB5P28074 263 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 GABRB3P28472 473 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 ELK3P41970 407 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 RPS15P62841 145 aaKnown RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 CUL1Q13616 776 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 FASTKQ14296 549 aaKnown RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 SF1Q15637 639 aaKnown RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 CYP2A13Q16696 494 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 PTCHD3Q3KNS1 767 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 TTLL9Q3SXZ7 439 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 HP1BP3Q5SSJ5 553 aaPredicted RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 ZNF385CQ66K41 422 aaPredicted RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 FCRL6Q6DN72 434 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 FIGLAQ6QHK4 219 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 FAM198BQ6UWH4 519 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 NEK10Q6ZWH5 1172 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CNTN4Q8IWV2 1026 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SYTL1Q8IYJ3 562 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 PDIK1LQ8N165 341 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 RAB42Q8N4Z0 105 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 OR9A1PQ8NGU1 263 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CD200R1Q8TD46 325 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 INPP5DQ92835 1189 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SNF8Q96H20 258 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 TRIM31Q9BZY9 425 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SLC7A5P2Q9GIP4 190 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 ADNPQ9H2P0 1102 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 STARD5Q9NSY2 213 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 EURLQ9NYK6 297 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SPATA7Q9P0W8 599 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.23□□□□□ -0.13
USP28-204ENST00000537642 PLCL2Q9UPR0 1127 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 CHMP2BQ9UQN3 213 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 TEX264Q9Y6I9 313 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 ZNF462Q96JM2 2506 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 SPTA1P02549 2419 aa14.23□□□□□ -0.13
USP28-204ENST00000537642 HEATR5BQ9P2D3 2071 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 B8ZZF3 427 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 MYO1CO00159 1063 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 SMAPO00193 183 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 FKBP9O95302 570 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 CATP04040 527 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 HBQ1P09105 142 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 RAB40ALP0C0E4 278 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 MPC1LP0DKB6 136 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 SFTPCP11686 197 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 RPL21P46778 160 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 MRPS25P82663 173 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 TIAL1Q01085 375 aaKnown RBP eCLIP14.22□□□□□ -0.13
USP28-204ENST00000537642 NFATC3Q12968 1075 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 KCNAB2Q13303 367 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 IL10RAQ13651 578 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 CYHR1Q6ZMK1 362 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 SYVN1Q86TM6 617 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 ENDOVQ8N8Q3 282 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 OR2A1Q8NGT9 310 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 APOBEC4Q8WW27 367 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 CERS2Q96G23 380 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 CFAP36Q96G28 342 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 NDNQ99608 321 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 MIPEPQ99797 713 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 INTS7Q9NVH2 962 aaKnown RBP14.22□□□□□ -0.13
USP28-204ENST00000537642 SLC17A6Q9P2U8 582 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 POLHQ9Y253 713 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 KCNMB2Q9Y691 235 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 AP1M2Q9Y6Q5 423 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 ANKRD12Q6UB98 2062 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 BAHCC1Q9P281 2608 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 MED13Q9UHV7 2174 aa14.22□□□□□ -0.13
USP28-204ENST00000537642 EFCAB8A8MWE9 144 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 ZSCAN9O15535 394 aaPredicted RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 VPS26AO75436 327 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 AHSGP02765 367 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 CBSLP0DN79 551 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 ENO3P13929 434 aaPredicted RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 CBSP35520 551 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 GRIA3P42263 894 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 CARSP49589 748 aaKnown RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 ARL4CP56559 192 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 YBX1P67809 324 aaKnown RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 NFKB2Q00653 900 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 HIF1AQ16665 826 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 UGT8Q16880 541 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 RBM20Q5T481 1227 aaKnown RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 TEDDM1Q5T9Z0 273 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 FAM69BQ5VUD6 431 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 STEAP4Q687X5 459 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 RHBDD2Q6NTF9 364 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 TLDC1Q6P9B6 456 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 TRMT10BQ6PF06 316 aaKnown RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 ZNF605Q86T29 641 aa14.21□□□□□ -0.13
USP28-204ENST00000537642 MCATQ8IVS2 390 aaKnown RBP14.21□□□□□ -0.13
USP28-204ENST00000537642 CPNE9Q8IYJ1 553 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms