RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 EID3Q8N140 333 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ASB11Q8WXH4 323 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 GFM2Q969S9 779 aaKnown RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 ZNF689Q96CS4 500 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 RBM4BQ9BQ04 359 aaKnown RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 CPPED1Q9BRF8 314 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 RBM4Q9BWF3 364 aaKnown RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 LTB4R2Q9NPC1 389 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 B4GALT6Q9UBX8 382 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SLC22A14Q9Y267 594 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 HS3ST2Q9Y278 367 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 PPIL1Q9Y3C6 166 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 IGLV3-16A0A075B6K0 115 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TMX2-CTNND1H3BSU7 103 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TGM5O43548 720 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 MTX2O75431 263 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 MYCLP1P12525 358 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 LAG3P18627 525 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SDC1P18827 310 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ITPKAP23677 461 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 CDKN2CP42773 168 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 SPINT3P49223 89 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 HNMTP50135 292 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 GALK1P51570 392 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 EMP3P54852 163 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 PPP2R2BQ00005 443 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TLE2Q04725 743 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 VAC14Q08AM6 782 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 EPS8Q12929 822 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 GGTA1PQ4G0N0 100 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 BROXQ5VW32 411 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 ANKRD34AQ69YU3 496 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 NEK5Q6P3R8 708 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 DHRS4L2Q6PKH6 230 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 TMC8Q8IU68 726 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 FAM9CQ8IZT9 166 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 BEND7Q8N7W2 519 aaPredicted RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 TERB1Q8NA31 727 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 PPP1R14BQ96C90 147 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 APIPQ96GX9 242 aa12.81□□□□□ -0.36
LDLR-203ENST00000535915 NAA50Q9GZZ1 169 aaKnown RBP12.81□□□□□ -0.36
LDLR-203ENST00000535915 PRRC2BQ5JSZ5 2229 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 KCNE1BA0A087WTH5 132 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 PER2O15055 1255 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 HS6ST1O60243 411 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 NUAK1O60285 661 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 NOL3O60936 208 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 POP4O95707 220 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 ATP1B2P14415 290 aaPredicted RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 IL7RP16871 459 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CYP2A7P20853 494 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 MAPK1P28482 360 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 HALP42357 657 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 SLC6A12P48065 614 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 DEFB103AP81534 67 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CARD16Q5EG05 197 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 DUS1LQ6P1R4 473 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 FKBP9P1Q75LS8 142 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 ANKRD33Q7Z3H0 272 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CALHM3Q86XJ0 350 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 OR10Q1Q8NGQ4 319 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CMTM7Q96FZ5 175 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 EGLN2Q96KS0 407 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 APOLD1Q96LR9 279 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 MBOAT4Q96T53 435 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 DOK1Q99704 481 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 P2RY13Q9BPV8 354 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 TUBA1CQ9BQE3 449 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CPEB1Q9BZB8 566 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 FANCEQ9HB96 536 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 GPRC5BQ9NZH0 403 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 SLCO3A1Q9UIG8 710 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 TMPRSS11EQ9UL52 423 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 PPT2Q9UMR5 302 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 FAF1Q9UNN5 650 aaPredicted RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 MAN2B2Q9Y2E5 1009 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 PCDHGA8Q9Y5G5 932 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 U3KQV3 271 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 RFXANKO14593 260 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 GRM6O15303 877 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CPNE6O95741 557 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 PRKACGP22612 351 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 PIGAP37287 484 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 TRIM60Q495X7 471 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 RBM48Q5RL73 367 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 ZDHHC20Q5W0Z9 365 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 SERPINA13PQ6UXR4 307 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 Q6ZVU0 165 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 R3HCC1LQ7Z5L2 792 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 ZCCHC7Q8N3Z6 543 aaKnown RBP12.8□□□□□ -0.36
LDLR-203ENST00000535915 CHST14Q8NCH0 376 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 THAP11Q96EK4 314 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 LMLNQ96KR4 655 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 AMBRA1Q9C0C7 1298 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 ATG10Q9H0Y0 220 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 MAGIXQ9H6Y5 334 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.8□□□□□ -0.36
LDLR-203ENST00000535915 FAM8A1Q9UBU6 413 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 CDH7Q9ULB5 785 aa12.8□□□□□ -0.36
LDLR-203ENST00000535915 A0A1W2PPW3 197 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms