RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 IL22Q9GZX6 179 aa17.11■□□□□ 0.33
PCF11-206ENST00000533018 EIF2B3Q9NR50 452 aaKnown RBP17.11■□□□□ 0.33
PCF11-206ENST00000533018 C5AR2Q9P296 337 aa17.11■□□□□ 0.33
PCF11-206ENST00000533018 TSR3Q9UJK0 312 aaKnown RBP17.11■□□□□ 0.33
PCF11-206ENST00000533018 PCM1Q15154 2024 aa17.11■□□□□ 0.33
PCF11-206ENST00000533018 MDC1Q14676 2089 aaKnown RBP17.11■□□□□ 0.33
PCF11-206ENST00000533018 A0A1B0GX78 115 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 MASP2O00187 686 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 AP3B1O00203 1094 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 KPNA5O15131 536 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 KLHL41O60662 606 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 CNOT3O75175 753 aaKnown RBP17.1■□□□□ 0.33
PCF11-206ENST00000533018 FGGP02679 453 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 PIM1P11309 404 aaPredicted RBP17.1■□□□□ 0.33
PCF11-206ENST00000533018 NMBRP28336 390 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 BDKRB1P46663 353 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 GRB7Q14451 532 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 FCRL6Q6DN72 434 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 CNSTQ6PJW8 725 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 CES3Q6UWW8 571 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 C4orf22Q6V702 233 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 LRRC6Q86X45 466 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 Q8NA96 180 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 RAD51AP1Q96B01 352 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 SELENOSQ9BQE4 189 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 MENTQ9BUN1 341 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 RAB11FIP5Q9BXF6 653 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 ATP13A2Q9NQ11 1180 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 TREX1Q9NSU2 369 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 CUTCQ9NTM9 273 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 CDC23Q9UJX2 597 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 RUVBL2Q9Y230 463 aaKnown RBP17.1■□□□□ 0.33
PCF11-206ENST00000533018 DRG1Q9Y295 367 aaKnown RBP17.1■□□□□ 0.33
PCF11-206ENST00000533018 MRFAP1Q9Y605 127 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 NFS1Q9Y697 457 aa17.1■□□□□ 0.33
PCF11-206ENST00000533018 TCP11X1B4DZS4 312 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 VAPBO95292 243 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 UMODP07911 640 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MCM3P25205 808 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 ITGA3P26006 1051 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MGAT1P26572 445 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 VARSP26640 1264 aaKnown RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 KCNJ1P48048 391 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 GRM7Q14831 915 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MYBPC3Q14896 1274 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 SIX1Q15475 284 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 KCTD19Q17RG1 926 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 EIF2S3LQ2VIR3 472 aaKnown RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 PLEKHN1Q494U1 663 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 TCTE1Q5JU00 501 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 PPP1R32Q7Z5V6 425 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 SDCCAG8Q86SQ7 713 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 IQCKQ8N0W5 287 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MPP5Q8N3R9 675 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 METTL27Q8N6F8 245 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 TTC29Q8NA56 475 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 PRR7Q8TB68 274 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MAIP1Q8WWC4 291 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 TM9SF4Q92544 642 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 MIPEPQ99797 713 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 ILKAPQ9H0C8 392 aaPredicted RBP17.09■□□□□ 0.33
PCF11-206ENST00000533018 P2RY12Q9H244 342 aa17.09■□□□□ 0.33
PCF11-206ENST00000533018 GOLGA8KD6RF30 607 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 GOLGA8TH3BQL2 631 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 AGPSO00116 658 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 PFDN6O15212 129 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 C1orf105O95561 183 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 FMO4P31512 558 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 VSX2P58304 361 aaPredicted RBP17.08■□□□□ 0.32
PCF11-206ENST00000533018 MRPL49Q13405 166 aaKnown RBP17.08■□□□□ 0.32
PCF11-206ENST00000533018 CCSMST1Q4G0I0 132 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 C4orf17Q53FE4 359 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 MRNIPQ6NTE8 343 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 DRICH1Q6PGQ1 229 aaPredicted RBP17.08■□□□□ 0.32
PCF11-206ENST00000533018 SHISA6Q6ZSJ9 500 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 OVCH1Q7RTY7 1134 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 TMEM151BQ8IW70 566 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 ZADH2Q8N4Q0 377 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 MAGEC3Q8TD91 643 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.08■□□□□ 0.32
PCF11-206ENST00000533018 ZUFSPQ96AP4 578 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 FAM136AQ96C01 138 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 C19orf60Q96EN9 201 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 MFSD3Q96ES6 412 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 ZNF552Q9H707 407 aaPredicted RBP17.08■□□□□ 0.32
PCF11-206ENST00000533018 SLC22A11Q9NSA0 550 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 SYBUQ9NX95 663 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 B3GNT3Q9Y2A9 372 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 ZKSCAN5Q9Y2L8 839 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 CNTRLQ7Z7A1 2325 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 DOCK10Q96BY6 2186 aa17.08■□□□□ 0.32
PCF11-206ENST00000533018 NUP210LQ5VU65 1888 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 KRT87PA6NCN2 255 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 TARM1B6A8C7 271 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 DSCR3O14972 297 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 CEP104O60308 925 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 SEMA7AO75326 666 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 IPO13O94829 963 aaKnown RBP17.07■□□□□ 0.32
PCF11-206ENST00000533018 CHRM3P20309 590 aa17.07■□□□□ 0.32
PCF11-206ENST00000533018 RPS3P23396 243 aaKnown RBP eCLIP17.07■□□□□ 0.321e-9■□□□□ 10.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms