RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 STX2P32856 288 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 TMPRSS3P57727 454 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 PDAP1Q13442 181 aaKnown RBP14.51□□□□□ -0.09
CPSF1-208ENST00000532560 GPR19Q15760 415 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 COL28A1Q2UY09 1125 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 WDR93Q6P2C0 686 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 C19orf48Q6RUI8 117 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 PAQR3Q6TCH7 311 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 TAX1BP1Q86VP1 789 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 SPNS2Q8IVW8 549 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 NLGN4XQ8N0W4 816 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 NLGN4YQ8NFZ3 816 aaPredicted RBP14.51□□□□□ -0.09
CPSF1-208ENST00000532560 EEF1AKMT1Q8WVE0 214 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 NKD1Q969G9 470 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 ZNF501Q96CX3 271 aaPredicted RBP14.51□□□□□ -0.09
CPSF1-208ENST00000532560 VPS39Q96JC1 886 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 ELMO2Q96JJ3 720 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 CCNL2Q96S94 520 aaPredicted RBP14.51□□□□□ -0.09
CPSF1-208ENST00000532560 CPNE1Q99829 537 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 ACBD3Q9H3P7 528 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 LRRC4CQ9HCJ2 640 aa14.51□□□□□ -0.09
CPSF1-208ENST00000532560 MTRF1LQ9UGC7 380 aaKnown RBP14.51□□□□□ -0.09
CPSF1-208ENST00000532560 PTPRQQ9UMZ3 2332 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 SNRNP200O75643 2136 aaKnown RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 FAM95CA0A1B0GW59 222 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 ZNF839A8K0R7 811 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 CXorf49A8MYA2 514 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 TSPAN12O95859 305 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 C8GP07360 202 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 ZNF28P17035 718 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 MAP4P27816 1152 aaKnown RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 OAS2P29728 719 aaKnown RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 HSD17B2P37059 387 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 ZIC1Q15915 447 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 MANEAQ5SRI9 462 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 CDHR3Q6ZTQ4 885 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 UBE2R2Q712K3 238 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 RELL1Q8IUW5 271 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 MYO1HQ8N1T3 1032 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 C2orf73Q8N5S3 287 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 ESX1Q8N693 406 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 LMNTD1Q8N9Z9 388 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 LINGO1Q96FE5 620 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 TCTN2Q96GX1 697 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 PKP4Q99569 1192 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 KLHL25Q9H0H3 589 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 TSPYL1Q9H0U9 437 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 PRORYQ9H606 182 aa14.5□□□□□ -0.09
CPSF1-208ENST00000532560 INTS7Q9NVH2 962 aaKnown RBP14.5□□□□□ -0.09
CPSF1-208ENST00000532560 DSPP15924 2871 aaKnown RBP14.49□□□□□ -0.09
CPSF1-208ENST00000532560 A0A1W2PPV9 198 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 TMEM150CB9EJG8 249 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 SLC16A5O15375 505 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 ZBTB14O43829 449 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 PIAS1O75925 651 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 KIAA0754O94854 1291 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 TIAF1O95411 115 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 SLC16A8O95907 504 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 ZNF37AP17032 561 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-208ENST00000532560 MAGP20916 626 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 ECHS1P30084 290 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 GP5P40197 560 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 IL2P60568 153 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 NAB1Q13506 487 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 TERF2Q15554 542 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 PWWP2BQ6NUJ5 590 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 HDXQ7Z353 690 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 TIPARPQ7Z3E1 657 aaKnown RBP14.49□□□□□ -0.09
CPSF1-208ENST00000532560 VASH2Q86V25 355 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 CACNA2D3Q8IZS8 1091 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 IL22RA1Q8N6P7 574 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 SNRNP27Q8WVK2 155 aaKnown RBP14.49□□□□□ -0.09
CPSF1-208ENST00000532560 SMPDL3AQ92484 453 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 CRELD1Q96HD1 420 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 FMO2Q99518 471 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 SLC12A9Q9BXP2 914 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 TXNDC16Q9P2K2 825 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 KLK4Q9Y5K2 254 aa14.49□□□□□ -0.09
CPSF1-208ENST00000532560 K7ENP7 123 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 CPNE3O75131 537 aaKnown RBP14.48□□□□□ -0.09
CPSF1-208ENST00000532560 MT-ND3P03897 115 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 CYP2A7P20853 494 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 PSMB5P28074 263 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 STAT5AP42229 794 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 GABRA4P48169 554 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 PNLIPRP1P54315 467 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 CXADRP78310 365 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 ABHD18Q0P651 414 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 FASTKQ14296 549 aaKnown RBP14.48□□□□□ -0.09
CPSF1-208ENST00000532560 NAA25Q14CX7 972 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 SF1Q15637 639 aaKnown RBP14.48□□□□□ -0.09
CPSF1-208ENST00000532560 KBTBD12Q3ZCT8 623 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 INO80CQ6PI98 192 aaPredicted RBP14.48□□□□□ -0.09
CPSF1-208ENST00000532560 C6orf15Q6UXA7 325 aaPredicted RBP14.48□□□□□ -0.09
CPSF1-208ENST00000532560 TMEM126BQ8IUX1 230 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 CTAGE3PQ8IX95 158 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 FAM20CQ8IXL6 584 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 OR2L3Q8NG85 312 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 OR2A1Q8NGT9 310 aa14.48□□□□□ -0.09
CPSF1-208ENST00000532560 OR1L3Q8NH93 324 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms