RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IFI35P80217 286 aaPredicted RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 CAPSQ13938 189 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 FRG1Q14331 258 aaKnown RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 FGFBP1Q14512 234 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CALCRLQ16602 461 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 DPCR1Q3MIW9 517 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 RABL6Q3YEC7 729 aaPredicted RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 PLEKHS1Q5SXH7 462 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 DHX40Q8IX18 779 aaKnown RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 MB21D2Q8IYB1 491 aaPredicted RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 ADGRF2Q8IZF7 708 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 SLC39A11Q8N1S5 342 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 PGBD5Q8N414 524 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 POC1AQ8NBT0 407 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 SPATA20Q8TB22 786 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 GTF3C6Q969F1 213 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 MTBPQ96DY7 904 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 MMABQ96EY8 250 aaPredicted RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 CALML4Q96GE6 196 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CMTM3Q96MX0 182 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ZNF385AQ96PM9 386 aaKnown RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 H2AFJQ9BTM1 129 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 ZBP1Q9H171 429 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 SLC6A13Q9NSD5 602 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 STARD5Q9NSY2 213 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 SPATS2LQ9NUQ6 558 aaKnown RBP3.78□□□□□ -1.8
CD44-235ENST00000532339 OR6C3Q9NZP0 311 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 AKAP9Q99996 3911 aa3.78□□□□□ -1.8
CD44-235ENST00000532339 CRYBG3Q68DQ2 2970 aa3.78□□□□□ -1.81
CD44-235ENST00000532339 LOXHD1Q8IVV2 1947 aa3.78□□□□□ -1.81
CD44-235ENST00000532339 MYH15Q9Y2K3 1946 aa3.78□□□□□ -1.81
CD44-235ENST00000532339 STAB1Q9NY15 2570 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CSMD2Q7Z408 3487 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CABIN1Q9Y6J0 2220 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 SYNDIG1LA6NDD5 238 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 TTC36A6NLP5 189 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 SLC25A17O43808 307 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ECI2O75521 394 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ERAL1O75616 437 aaKnown RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE7O76087 117 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 TFP02787 698 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 DNTTP04053 509 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 SP1P08047 785 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE12FP0CL80 117 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE12GP0CL81 117 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE12IP0CL82 117 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 IGHV4-30-4P0DP06 118 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 NR2F1P10589 423 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 IRF1P10914 325 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 EEF2P13639 858 aaKnown RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 PTPN2P17706 415 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 HOXC13P31276 330 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CDAP32320 146 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 DCTP40126 519 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 TMPOP42166 694 aaKnown RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 GABRB2P47870 512 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GNAQP50148 359 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CDH8P55286 799 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ECT2LQ008S8 904 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 SEMG2Q02383 582 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 MGAT3Q09327 533 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GOLGA8DPQ0D2H9 430 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 NIPAL4Q0D2K0 466 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GRIK3Q13003 919 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 STK4Q13043 487 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE1Q13065 139 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GAGE4Q13068 117 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 DHX34Q14147 1143 aaKnown RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 CRYMQ14894 314 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 MFSD4BQ5TF39 518 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GKAP1Q5VSY0 366 aaPredicted RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 PMS2CLQ68D20 193 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 NAA16Q6N069 864 aaPredicted RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 TMEM154Q6P9G4 183 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 SARM1Q6SZW1 724 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 TMCO3Q6UWJ1 677 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 Q6ZS52 159 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CHST9Q7L1S5 443 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 G2E3Q7L622 706 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 CHST3Q7LGC8 479 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 C17orf53Q8N3J3 647 aaPredicted RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 PPTC7Q8NI37 304 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 POMGNT1Q8WZA1 660 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 FGF11Q92914 225 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 OTULINQ96BN8 352 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ZNF707Q96C28 371 aaPredicted RBP3.77□□□□□ -1.81
CD44-235ENST00000532339 MSANTD3Q96H12 275 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 FEM1CQ96JP0 617 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 C1orf74Q96LT6 269 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 LRFN5Q96NI6 719 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 OR1F2PQ96R84 312 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 EPYCQ99645 322 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 NUF2Q9BZD4 464 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 KAT14Q9H8E8 782 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ASAH2Q9NR71 780 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 C2orf42Q9NWW7 574 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 ANKRD10Q9NXR5 420 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 HAO1Q9UJM8 370 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 RPS6KA6Q9UK32 745 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 TMEM5Q9Y2B1 443 aa3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms