RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZC3H12BQ5HYM0 836 aaKnown RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 AARS2Q5JTZ9 985 aaKnown RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 YOD1Q5VVQ6 348 aaPredicted RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 FCRL6Q6DN72 434 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 TTLL10Q6ZVT0 673 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 COX15Q7KZN9 410 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 OVCH1Q7RTY7 1134 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 CUZD1Q86UP6 607 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ZADH2Q8N4Q0 377 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 LMNTD1Q8N9Z9 388 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 OR6P1Q8NGX9 317 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ZNF285Q96NJ3 590 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 IL17FQ96PD4 163 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 SPSB2Q99619 263 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 RAB11FIP5Q9BXF6 653 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 ZBTB20Q9HC78 741 aaPredicted RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 SLC6A20Q9NP91 592 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 INTS7Q9NVH2 962 aaKnown RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 ERRFI1Q9UJM3 462 aaPredicted RBP10.89□□□□□ -0.67
VPS28-214ENST00000531032 FBXL4Q9UKA2 621 aa10.89□□□□□ -0.67
VPS28-214ENST00000531032 A1L4Q6 167 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 FITM1A5D6W6 292 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 ANKUB1A6NFN9 424 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 TARM1B6A8C7 271 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 SOCS6O14544 535 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 PRMT5O14744 637 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 DSCR3O14972 297 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 PRICKLE3O43900 615 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 IFNB1P01574 187 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 APRTP07741 180 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 PIM1P11309 404 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 MCM3P25205 808 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 ITGA3P26006 1051 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 TTPAP49638 278 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 GRM7Q14831 915 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 TMED2Q15363 201 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 NKG7Q16617 165 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 TCTE1Q5JU00 501 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 PRAMEF13Q5VWM6 474 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 FIGLAQ6QHK4 219 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 IGFL2Q6UWQ7 119 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 MAMDC2Q7Z304 686 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 LDB1Q86U70 411 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 TAX1BP1Q86VP1 789 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 KRT222Q8N1A0 295 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 C2orf73Q8N5S3 287 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 PPHLN1Q8NEY8 458 aaKnown RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 CFAP61Q8NHU2 1237 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 PPP4R1Q8TF05 950 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 UBE2Q2Q8WVN8 375 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 DOCK10Q96BY6 2186 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 WDR77Q9BQA1 342 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 TSGA10Q9BZW7 698 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 MRM3Q9HC36 420 aaKnown RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 RAB6BQ9NRW1 208 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 CUTCQ9NTM9 273 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 CATSPERZQ9NTU4 200 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 MARCH4Q9P2E8 410 aaPredicted RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 CIDEBQ9UHD4 219 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 CDC23Q9UJX2 597 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 NXT1Q9UKK6 140 aaKnown RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 SLC39A10Q9ULF5 831 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 ZNF148Q9UQR1 794 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 SLC5A6Q9Y289 635 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 NTNG1Q9Y2I2 539 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 KLK4Q9Y5K2 254 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 HS3ST3B1Q9Y662 390 aa10.88□□□□□ -0.67
VPS28-214ENST00000531032 COPG1Q9Y678 874 aaKnown RBP10.88□□□□□ -0.67
VPS28-214ENST00000531032 NRDCO43847 1150 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 CTSVO60911 334 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 ALOX12BO75342 701 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 CLDN1O95832 211 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 ETS1P14921 441 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 RPS3P23396 243 aaKnown RBP eCLIP10.87□□□□□ -0.675e-7■■□□□ 13
VPS28-214ENST00000531032 GRIA3P42263 894 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 SF1Q15637 639 aaKnown RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 PCID2Q5JVF3 399 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 SEL1L2Q5TEA6 688 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 KIRREL2Q6UWL6 708 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 PRUNE1Q86TP1 453 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 SLC13A5Q86YT5 568 aaPredicted RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 MPP5Q8N3R9 675 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 RNF10Q8N5U6 811 aaKnown RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 HMGCLL1Q8TB92 370 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 COG1Q8WTW3 980 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 ZDHHC19Q8WVZ1 309 aaPredicted RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 C1orf54Q8WWF1 131 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 ZUFSPQ96AP4 578 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 PANX3Q96QZ0 392 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 SELENOSQ9BQE4 189 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 P2RY12Q9H244 342 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 EIF2B3Q9NR50 452 aaKnown RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 CHRAC1Q9NRG0 131 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 SEMA3GQ9NS98 782 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 TREX1Q9NSU2 369 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 IL1RAPL1Q9NZN1 696 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 PAK5Q9P286 719 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 CTSFQ9UBX1 484 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 GNPTGQ9UJJ9 305 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms