RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 TSR3Q9UJK0 312 aaKnown RBP13.14□□□□□ -0.31
TCOF1-215ENST00000515516 FAM237BA0A1B0GVD1 139 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TTLL8A6PVC2 850 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TARM1B6A8C7 271 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 H3BMH7 237 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 GOLGA8MH3BSY2 632 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 PGRMC1O00264 195 aaKnown RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 KLHL41O60662 606 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 PKMP14618 531 aaKnown RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 ATP5DP30049 168 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 GRIA3P42263 894 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 ATP1A4Q13733 1029 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 GRB7Q14451 532 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 GRM7Q14831 915 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 NAA25Q14CX7 972 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 KCTD19Q17RG1 926 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TTLL9Q3SXZ7 439 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 ANKRD20A4Q4UJ75 823 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 YOD1Q5VVQ6 348 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TTC27Q6P3X3 843 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TTLL10Q6ZVT0 673 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 CAND1Q86VP6 1230 aaKnown RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 HPS6Q86YV9 775 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 CILP2Q8IUL8 1156 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 EFCAB3Q8N7B9 438 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 LMNTD1Q8N9Z9 388 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 MCUQ8NE86 351 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 ZNF669Q96BR6 464 aaPredicted RBP13.13□□□□□ -0.31
TCOF1-215ENST00000515516 PTERQ96BW5 349 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 FAM136AQ96C01 138 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 MIPEPQ99797 713 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 SELENOSQ9BQE4 189 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 MENTQ9BUN1 341 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 SPATA7Q9P0W8 599 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 NFS1Q9Y697 457 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 FAM169AQ9Y6X4 670 aa13.13□□□□□ -0.31
TCOF1-215ENST00000515516 TLN1Q9Y490 2541 aaKnown RBP13.12□□□□□ -0.31
TCOF1-215ENST00000515516 A0A1B0GX78 115 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 ZNF839A8K0R7 811 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 KIF5CO60282 957 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 SRPX2O60687 465 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-215ENST00000515516 DPM1O60762 260 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 NIPSNAP2O75323 286 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 KLF7O75840 302 aaPredicted RBP13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CATP04040 527 aaKnown RBP13.12□□□□□ -0.31
TCOF1-215ENST00000515516 PDGFAP04085 211 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CTSBP07858 339 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CMPK1P30085 196 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 MLLT10P55197 1068 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 SLC9A5Q14940 896 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CYP2A13Q16696 494 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 FAM214AQ32MH5 1076 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 ANKRD22Q5VYY1 191 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 FCRL6Q6DN72 434 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 ZNF470Q6ECI4 717 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CLEC1AQ8NC01 280 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 FDCSPQ8NFU4 85 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 OR2Y1Q8NGV0 311 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 HMGCLL1Q8TB92 370 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 CALML6Q8TD86 181 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 GPR83Q9NYM4 423 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 IL1RAPL1Q9NZN1 696 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 RUVBL2Q9Y230 463 aaKnown RBP13.12□□□□□ -0.31
TCOF1-215ENST00000515516 MAD1L1Q9Y6D9 718 aa13.12□□□□□ -0.31
TCOF1-215ENST00000515516 PHF2O75151 1096 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 VPS4BO75351 444 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 CEACAM4O75871 244 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 USP1O94782 785 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 MATN4O95460 622 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 ALPPP05187 535 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 RPA3P35244 121 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 HSD17B2P37059 387 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 FNTAP49354 379 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 TSTA3Q13630 321 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 PPP1R7Q15435 360 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 CYP1B1Q16678 543 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 KLHL38Q2WGJ6 581 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 CCSMST1Q4G0I0 132 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 PAPD7Q5XG87 772 aaKnown RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 MRGPREQ86SM8 312 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 LMNTD2Q8IXW0 634 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 OR9A1PQ8NGU1 263 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 GABPB2Q8TAK5 448 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 ACTRT1Q8TDG2 376 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 SERPINB12Q96P63 405 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 OSBPL9Q96SU4 736 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 MLXIPLQ9NP71 852 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 CUTCQ9NTM9 273 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 C20orf96Q9NUD7 363 aaPredicted RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 UTP6Q9NYH9 597 aaKnown RBP13.11□□□□□ -0.31
TCOF1-215ENST00000515516 VPS4AQ9UN37 437 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 PLAAQ9Y263 795 aa13.11□□□□□ -0.31
TCOF1-215ENST00000515516 DSCR3O14972 297 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 PRICKLE3O43900 615 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-215ENST00000515516 CCNDBP1O95273 360 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 ALBP02768 609 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 ERVK-10P10266 1014 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 VSX2P58304 361 aaPredicted RBP13.1□□□□□ -0.31
TCOF1-215ENST00000515516 ARHGAP19Q14CB8 494 aa13.1□□□□□ -0.31
TCOF1-215ENST00000515516 LONRF1Q17RB8 773 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms