RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 RETREG3Q86VR2 466 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 HPS6Q86YV9 775 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.13□□□□□ -1.113e-6■■■■■ 69.6
RNF4-220ENST00000513578 RGL4Q8IZJ4 473 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 LILRA3Q8N6C8 439 aaPredicted RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 FNDC5Q8NAU1 212 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 PHC3Q8NDX5 983 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 OR9I1Q8NGQ6 314 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 DNAJB8Q8NHS0 232 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 WDR20Q8TBZ3 569 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 RAD51AP1Q96B01 352 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 SPDL1Q96EA4 605 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 DUS3LQ96G46 650 aaKnown RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 SLC17A9Q9BYT1 436 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 ACTL8Q9H568 366 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 WDR26Q9H7D7 661 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 BRF2Q9HAW0 419 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 LRTM1Q9HBL6 345 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 S100A14Q9HCY8 104 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 SPAG4Q9NPE6 437 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 MBNL1Q9NR56 388 aaKnown RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 SLC2A4RGQ9NR83 387 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 INTS7Q9NVH2 962 aaKnown RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 C1orf109Q9NX04 203 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 SIRT5Q9NXA8 310 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 NKX1-2Q9UD57 310 aaPredicted RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 LEF1Q9UJU2 399 aaPredicted RBP8.13□□□□□ -1.11
RNF4-220ENST00000513578 ANGPTL2Q9UKU9 493 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 PPT2Q9UMR5 302 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 NCKAP1Q9Y2A7 1128 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 SLC17A4Q9Y2C5 497 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 LRP4O75096 1905 aa8.13□□□□□ -1.11
RNF4-220ENST00000513578 C15orf38-AP3S2A0A0A6YYH1 394 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 A0A1W2PQU0 124 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SHISA7A6NL88 538 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ZNF839A8K0R7 811 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 E7ENX8 843 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 NR5A2O00482 541 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 TOR1BO14657 336 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ACOT8O14734 319 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 CFLARO15519 480 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 GALR2O43603 387 aaPredicted RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 PI15O43692 258 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 PRMT3O60678 531 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 KRT36O76013 467 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SLC16A8O95907 504 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 PDYNP01213 254 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 IGLV3-19P01714 112 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 PCCBP05166 539 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 G6PDP11413 515 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 HSD17B1P14061 328 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SLC2A4P14672 509 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ARL1P40616 181 aaPredicted RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 BDKRB1P46663 353 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 THOP1P52888 689 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 CLDN8P56748 225 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 C21orf58P58505 322 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 KIAA1024LP59773 190 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 UFM1P61960 85 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 IRF8Q02556 426 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 NAE1Q13564 534 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 LAPTM5Q13571 262 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 CCINQ13939 588 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 DOC2AQ14183 400 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 TRIM25Q14258 630 aaKnown RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 NFE2L1Q14494 772 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 INPP5AQ14642 412 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 RCN1Q15293 331 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 IMPG1Q17R60 797 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 CCSMST1Q4G0I0 132 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 USP39Q53GS9 565 aaKnown RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 SAMD4BQ5PRF9 694 aaKnown RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 CACHD1Q5VU97 1274 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 FAM219BQ5XKK7 198 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 FRG2Q64ET8 278 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 CAPRIN2Q6IMN6 1127 aaKnown RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 ZFP1Q6P2D0 407 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SCIMPQ6UWF3 145 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 LCTLQ6UWM7 567 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SLCO4C1Q6ZQN7 724 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 FAM83HQ6ZRV2 1179 aaPredicted RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 MSANTD1Q6ZTZ1 278 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ARPINQ7Z6K5 226 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 TRIM69Q86WT6 500 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 DCUN1D3Q8IWE4 304 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 DCBLD1Q8N8Z6 715 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 GOLM1Q8NBJ4 401 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ZNF480Q8WV37 535 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SELENOMQ8WWX9 145 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 FOXJ1Q92949 421 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 LRRC58Q96CX6 371 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 REPS1Q96D71 796 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 ASB9Q96DX5 294 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 SIPA1Q96FS4 1042 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 FRG2BQ96QU4 278 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 HHIPQ96QV1 700 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 OR4K3Q96R72 315 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 UHRF1Q96T88 793 aaPredicted RBP8.12□□□□□ -1.11
RNF4-220ENST00000513578 EFCAB11Q9BUY7 163 aa8.12□□□□□ -1.11
RNF4-220ENST00000513578 PHF7Q9BWX1 381 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms