RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OARD1Q9Y530 152 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PMF1-BGLAPU3KQ54 211 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 H7C0S8 307 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC16A6O15403 523 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 KDM1AO60341 852 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 FAM20BO75063 409 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ERN1O75460 977 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 KRT6AP02538 564 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 KRT6BP04259 564 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CD9P21926 228 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 KRT6CP48668 564 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 MFSD14CQ5VZR4 134 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ATG9BQ674R7 924 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 AHSA2Q719I0 299 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 RBFAQ8N0V3 343 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TMEM132CQ8N3T6 1108 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SOCS4Q8WXH5 440 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ELOVL6Q9H5J4 265 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 AKIP1Q9NQ31 210 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 PPT2Q9UMR5 302 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TPRKBQ9Y3C4 175 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TRBV5-3A0A0A0MS03 114 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SMAD6O43541 496 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TBL1XO60907 577 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ADAMTS4O75173 837 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 GABARAPO95166 117 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CPSF4O95639 269 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 EOMESO95936 686 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 UGT2B4P06133 528 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CKBP12277 381 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 AQP1P29972 269 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 NRIP1P48552 1158 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC11A1P49279 550 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 FLT3LGP49771 235 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ARHGDIAP52565 204 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 HSPA14Q0VDF9 509 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 MRPL58Q14197 206 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 GBX1Q14549 363 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CLCA4Q14CN2 919 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SF1Q15637 639 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 INAVAQ3KP66 663 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CATSPEREQ5SY80 951 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 OR2T5Q6IEZ7 315 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 FUT10Q6P4F1 479 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CERS6Q6ZMG9 384 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 Q6ZPB1 254 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 DSG4Q86SJ6 1040 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ZBTB2Q8N680 514 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TTC29Q8NA56 475 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 OR2T29Q8NH02 315 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 PSMA8Q8TAA3 256 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 KLHL25Q9H0H3 589 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 LHX3Q9UBR4 397 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SAMHD1Q9Y3Z3 626 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ZNF840PA6NDX5 716 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CLDN9O95484 217 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ITGALP20701 1170 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 CCND3P30281 292 aaPredicted RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 RYKP34925 604 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 OR1D2P34982 312 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 RPIAP49247 311 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC35A2P78381 396 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 VLDLRP98155 873 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 NFATC2Q13469 925 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 DGUOKQ16854 277 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 C5orf22Q49AR2 442 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 ADGRF1Q5T601 910 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 TRIM46Q7Z4K8 759 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 APIPQ96GX9 242 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 WDR12Q9GZL7 423 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 DICER1Q9UPY3 1922 aaKnown RBP9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 SCN10AQ9Y5Y9 1956 aa9.02□□□□□ -0.97
LIMCH1-215ENST00000512632 C2orf78A6NCI8 922 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 TMEM189-UBE2V1I3L0A0 370 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 GAPDHSO14556 408 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SEC24AO95486 1093 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ST13P50502 369 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 KCNC4Q03721 635 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SLC13A2Q13183 592 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 DDX39BQ13838 428 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 TAF12Q16514 161 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 LGALS12Q96DT0 336 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 TPD52L3Q96J77 140 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ASPSCR1Q9BZE9 553 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 MIR1-1HGQ9H1L0 117 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 KCNH6Q9H252 994 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ABCB10Q9NRK6 738 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 VPS51Q9UID3 782 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ZNF229Q9UJW7 825 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ZNF451Q9Y4E5 1061 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 EVPLLA8MZ36 301 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 SEPT4O43236 478 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 EBLN1P0CF75 366 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 PSMA3P25788 255 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 GZMMP51124 257 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 ZXDBP98169 803 aa9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 TRIM71Q2Q1W2 868 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-215ENST00000512632 RFX4Q33E94 735 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms