RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 MARK2Q7KZI7 788 aaKnown RBP3.16□□□□□ -1.9
LSM6-205ENST00000507449 NUDT13Q86X67 352 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 GRAPLQ8TC17 118 aaPredicted RBP3.16□□□□□ -1.9
LSM6-205ENST00000507449 NSMAFQ92636 917 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 ST6GALNAC6Q969X2 333 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 FAM71F1Q96KD3 344 aaPredicted RBP3.16□□□□□ -1.9
LSM6-205ENST00000507449 CCDC3Q9BQI4 270 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 DESI2Q9BSY9 194 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 MMP28Q9H239 520 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 FN3KQ9H479 309 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 LMAN1LQ9HAT1 526 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 CACNG4Q9UBN1 327 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 NOL7Q9UMY1 257 aaKnown RBP3.16□□□□□ -1.9
LSM6-205ENST00000507449 KCNK7Q9Y2U2 307 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 RIPK3Q9Y572 518 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 TRIM17Q9Y577 477 aa3.16□□□□□ -1.9
LSM6-205ENST00000507449 C5orf52A6NGY3 159 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 IFITM10A6NMD0 228 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 CCER2I3L3R5 266 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 PIGNO95427 931 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 TGDSO95455 350 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 ATP1A1P05023 1023 aaKnown RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 SUPT20HL2P0C7V6 817 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 LBPP18428 481 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 EFNA1P20827 205 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 PSMA3P25788 255 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 TIA1P31483 386 aaKnown RBP eCLIP3.15□□□□□ -1.91
LSM6-205ENST00000507449 TIMP3P35625 211 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 POU3F1Q03052 451 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 ODF4Q2M2E3 257 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 CTU2Q2VPK5 515 aaKnown RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 ACCSLQ4AC99 568 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 LACTB2Q53H82 288 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 GDPD4Q6W3E5 623 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 MEX3BQ6ZN04 569 aaKnown RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 C18orf65Q6ZTR6 163 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 C11orf57Q6ZUT1 292 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 RTN4RL2Q86UN3 420 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 FAM9BQ8IZU0 186 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 APCDD1Q8J025 514 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 LMNTD1Q8N9Z9 388 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 ZNF383Q8NA42 475 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 OR10Q1Q8NGQ4 319 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 C9orf43Q8TAL5 461 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 HEXDCQ8WVB3 486 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 RAD54LQ92698 747 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 ZNF524Q96C55 264 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 THOC1Q96FV9 657 aaKnown RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 FERMT1Q9BQL6 677 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 GPATCH1Q9BRR8 931 aaKnown RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 RHNO1Q9BSD3 238 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 SHARPINQ9H0F6 387 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 TLE6Q9H808 572 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 SDF2L1Q9HCN8 221 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 SPHK1Q9NYA1 384 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 FRMD4AQ9P2Q2 1039 aaPredicted RBP3.15□□□□□ -1.91
LSM6-205ENST00000507449 RASAL2Q9UJF2 1139 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 PROCRQ9UNN8 238 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 KIAA1210Q9ULL0 1709 aa3.15□□□□□ -1.91
LSM6-205ENST00000507449 FAM172BPA6NC97 362 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 CCL24O00175 119 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 PSMD14O00487 310 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 ATP6V0E1O15342 81 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 FGF17O60258 216 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 CIDEAO60543 219 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 LMX1BO60663 402 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 PRAF2O60831 178 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 PRKRAO75569 313 aaKnown RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 NGFP01138 241 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 IGLV2-11P01706 119 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 IGHV4-31P0DP07 118 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 TCEA1P23193 301 aaKnown RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 PSMB4P28070 264 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 WNT5AP41221 380 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 TNNT3P45378 269 aaPredicted RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 MTCP1P56278 107 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 GCNT1Q02742 428 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 RASGEF1BQ0VAM2 473 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 TNK1Q13470 666 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 RRS1Q15050 365 aaKnown RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 P2RY6Q15077 328 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 PTGISQ16647 500 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 UGCGQ16739 394 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 SLC25A53Q5H9E4 307 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 STPG1Q5TH74 334 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 SHEQ5VZ18 495 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 SLC27A1Q6PCB7 646 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 MOXD1Q6UVY6 613 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 ENPP7Q6UWV6 458 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 RBMS3Q6XE24 437 aaKnown RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 ANKRD33Q7Z3H0 272 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 TRPT1Q86TN4 253 aaKnown RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 ISCA2Q86U28 154 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 EID3Q8N140 333 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 SIX6OS1Q8N1H7 587 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 RASGEF1AQ8N9B8 481 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 OR4K1Q8NGD4 311 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 OR52N5Q8NH56 324 aa3.14□□□□□ -1.91
LSM6-205ENST00000507449 PHLDA1Q8WV24 401 aaPredicted RBP3.14□□□□□ -1.91
LSM6-205ENST00000507449 PROX1Q92786 737 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms