RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	HIST1H2AH	Q96KK5	128 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IL17F	Q96PD4	163 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	OR2A14	Q96R47	310 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	HIST1H2AJ	Q99878	128 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	H2AFJ	Q9BTM1	129 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	NMRAL1	Q9HBL8	299 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	C1GALT1	Q9NS00	363 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SPHK1	Q9NYA1	384 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	EURL	Q9NYK6	297 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KLK13	Q9UKR3	277 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	OARD1	Q9Y530	152 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FER1L5	A0AVI2	2057 aa		11.51	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MED19	A0JLT2	244 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	GSAP	A4D1B5	854 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	PABPN1L	A6NDY0	278 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	NPEPPSL1	A6NEC2	478 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ISM1	B1AKI9	464 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489		E7ENX8	843 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CDH16	O75309	829 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RFPL1	O75677	317 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KLHL2	O95198	593 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FKBP9	O95302	570 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	COL6A2	P12110	1019 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	UGT2B7	P16662	529 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IMPA1	P29218	277 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	OAS2	P29728	719 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	GMPR	P36959	345 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CDKL1	Q00532	357 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	TAP2	Q03519	686 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	C16orf72	Q14CZ0	275 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	TSN	Q15631	228 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SLC5A12	Q1EHB4	618 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FAM83E	Q2M2I3	478 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CDKL4	Q5MAI5	379 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CACHD1	Q5VU97	1274 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SPESP1	Q6UW49	350 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FAM92B	Q6ZTR7	304 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ISCA2	Q86U28	154 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KMT5C	Q86Y97	462 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MARCH9	Q86YJ5	346 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RIBC1	Q8N443	379 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SPATA6L	Q8N4H0	392 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	C2orf73	Q8N5S3	287 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	LMNTD1	Q8N9Z9	388 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	AGBL5	Q8NDL9	886 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MYRIP	Q8NFW9	859 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	WDR36	Q8NI36	951 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ACMSD	Q8TDX5	336 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MZB1	Q8WU39	189 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	HNRNPLL	Q8WVV9	542 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SMPDL3A	Q92484	453 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FBXL8	Q96CD0	374 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	NXNL1	Q96CM4	212 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CABS1	Q96KC9	395 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MAP3K3	Q99759	626 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CMKLR1	Q99788	373 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	TMEM109	Q9BVC6	243 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	PITPNM3	Q9BZ71	974 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ZNF768	Q9H5H4	540 aa	Known RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IGSF5	Q9NSI5	407 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ARL15	Q9NXU5	204 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	AKAP7	Q9P0M2	348 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	STOX2	Q9P2F5	926 aa	Predicted RBP	11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KLHL3	Q9UH77	587 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	MSRB2	Q9Y3D2	182 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	AKAP13	Q12802	2813 aa		11.5	□□□□□ -0.57
PDLIM5-208	ENST00000504489	NCOR2	Q9Y618	2525 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IGHV5-51	A0A0C4DH38	117 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489		A0A1W2PPV9	198 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489		A8MU76	341 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KIF1C	O43896	1103 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RASSF9	O75901	435 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	TFEB	P19484	476 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SPINK2	P20155	84 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CDH3	P22223	829 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	CSTF2	P33240	577 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SLCO1A2	P46721	670 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IRF9	Q00978	393 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IFFO1	Q0D2I5	559 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FASTK	Q14296	549 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ACAP2	Q15057	778 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	TGFBI	Q15582	683 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	OR4D1	Q15615	310 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	FBXO38	Q6PIJ6	1188 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	AGTRAP	Q6RW13	159 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RAB11FIP2	Q7L804	512 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	GPSM1	Q86YR5	675 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	LRRC56	Q8IYG6	542 aa	Predicted RBP	11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	SYTL1	Q8IYJ3	562 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	IQCK	Q8N0W5	287 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RCBTB1	Q8NDN9	531 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	OR2W6P	Q8NHA6	318 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	RHEBL1	Q8TAI7	183 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	STAG3L4	Q8TBR4	150 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	EPS8L3	Q8TE67	593 aa	Known RBP	11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	KCTD4	Q8WVF5	259 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	ATL1	Q8WXF7	558 aa		11.49	□□□□□ -0.57
PDLIM5-208	ENST00000504489	PTER	Q96BW5	349 aa		11.49	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms