RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 PCMTD2Q9NV79 361 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 EURLQ9NYK6 297 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 CIDEBQ9UHD4 219 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 ADAMTS6Q9UKP5 1117 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 PLAGL1Q9UM63 463 aa9.73□□□□□ -0.85
NUP54-203ENST00000504173 IGHV1OR21-1A0A087WYE8 117 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 MYO1CO00159 1063 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CDC7O00311 574 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 B4GAT1O43505 415 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 BRINP1O60477 761 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RFPL1O75677 317 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 MT-ND3P03897 115 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 HIST1H2AGP0C0S8 130 aaPredicted RBP9.72□□□□□ -0.85
NUP54-203ENST00000504173 JUPP14923 745 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CD1DP15813 335 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 HIST1H2ADP20671 130 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 SHMT2P34897 504 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 SLC26A3P40879 764 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RAB28P51157 221 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CCL7P80098 99 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 GPLD1P80108 840 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 IRF9Q00978 393 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 ZNF844Q08AG5 666 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CASP8Q14790 479 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 FAM83EQ2M2I3 478 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CCSMST1Q4G0I0 132 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CEP85LQ5SZL2 805 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 NKAIN2Q5VXU1 208 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 KLHL35Q6PF15 583 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 LRIG3Q6UXM1 1119 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 FRA10AC1Q70Z53 315 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 ADAMTSL2Q86TH1 951 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 AMIGO1Q86WK6 493 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 OOSP2Q86WS3 158 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RASGRP3Q8IV61 690 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 IQCKQ8N0W5 287 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CYP4X1Q8N118 509 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 FBXO15Q8NCQ5 510 aaPredicted RBP9.72□□□□□ -0.85
NUP54-203ENST00000504173 ZNF248Q8NDW4 579 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 OR4E2Q8NGC2 313 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 OR9A1PQ8NGU1 263 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 WDR48Q8TAF3 677 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 MCOLN3Q8TDD5 553 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 MZB1Q8WU39 189 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 ANKRD7Q92527 254 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 DLG3Q92796 817 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 NXNL1Q96CM4 212 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 HIST1H2AHQ96KK5 128 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 UBXN10Q96LJ8 280 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RUFY1Q96T51 708 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 PKP4Q99569 1192 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 HIST1H2AJQ99878 128 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 H2AFJQ9BTM1 129 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RAB11FIP5Q9BXF6 653 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 SLC12A9Q9BXP2 914 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 TRIM54Q9BYV2 358 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 TFB2MQ9H5Q4 396 aaKnown RBP9.72□□□□□ -0.85
NUP54-203ENST00000504173 XKR8Q9H6D3 395 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 PARVBQ9HBI1 364 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 NMRAL1Q9HBL8 299 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9.72□□□□□ -0.85
NUP54-203ENST00000504173 LNPEPQ9UIQ6 1025 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 IKZF3Q9UKT9 509 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 ICKQ9UPZ9 632 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 PDE10AQ9Y233 779 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 SSUH2Q9Y2M2 353 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 RP1P56715 2156 aa9.72□□□□□ -0.85
NUP54-203ENST00000504173 A0A1W2PQM1 296 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 KRT87PA6NCN2 255 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 OR6C74A6NCV1 312 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 GOLGA8RI6L899 631 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 RGS16O15492 202 aaPredicted RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 SUV39H1O43463 412 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 OPA1O60313 960 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 KLHL2O95198 593 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 ENO2P09104 434 aaPredicted RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 PYGBP11216 843 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 TFEBP19484 476 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 CD1CP29017 333 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 PKLRP30613 574 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 CAPZBP47756 277 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 GLRBP48167 497 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 KPNA2P52292 529 aaKnown RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 VAC14Q08AM6 782 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 DLG1Q12959 904 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 NFATC3Q12968 1075 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 PRKAA1Q13131 559 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 SPIDRQ14159 915 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 GRB7Q14451 532 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 TSNQ15631 228 aaKnown RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 PHKG1Q16816 387 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 ARMC6Q6NXE6 501 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 KLC3Q6P597 504 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 SBSNQ6UWP8 590 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 USP53Q70EK8 1073 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 CROCCP2Q86T23 111 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 CENPLQ8N0S6 344 aaPredicted RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 PLD6Q8N2A8 252 aaKnown RBP9.71□□□□□ -0.86
NUP54-203ENST00000504173 ACMSDQ8TDX5 336 aa9.71□□□□□ -0.86
NUP54-203ENST00000504173 NCSTNQ92542 709 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms