RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 DCST1Q5T197 706 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 Q6ZVU0 165 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SAPCD2Q86UD0 394 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 GJD3Q8N144 294 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ING5Q8WYH8 240 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 DPF3Q92784 378 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 HDHD2Q9H0R4 259 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 OR2AG1Q9H205 316 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF696Q9H7X3 374 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ARNT2Q9HBZ2 717 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SH3GLB1Q9Y371 365 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 TESMINQ9Y4I5 508 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 LRRC37AA6NMS7 1700 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 LEFTY2O00292 366 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 CYP7B1O75881 506 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 HNF1BP35680 557 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SH3BP2P78314 561 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 TLR1Q15399 786 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 HKDC1Q2TB90 917 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SPANXN4Q5MJ08 99 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 RTP2Q5QGT7 225 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PARP8Q8N3A8 854 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 C2orf73Q8N5S3 287 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC43A3Q8NBI5 491 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 VANGL1Q8TAA9 524 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 AP3S1Q92572 193 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 KHSRPQ92945 711 aaKnown RBP eCLIP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 NOL6Q9H6R4 1146 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 FZD4Q9ULV1 537 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 BTBD3Q9Y2F9 522 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PCDHGA7Q9Y5G6 932 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 DGKBQ9Y6T7 804 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 KIF13BQ9NQT8 1826 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SSC5DA1L4H1 1573 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 H0YAE9 185 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 H3BSA7 217 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 AOC2O75106 756 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 GSRP00390 522 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 FGF4P08620 206 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ADRA1AP35348 466 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 TCEA2Q15560 299 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PTCHD3Q3KNS1 767 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 OR2T5Q6IEZ7 315 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PDE12Q6L8Q7 609 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 CMTM8Q8IZV2 173 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 POC5Q8NA72 575 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 OR2T29Q8NH02 315 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 COX4I2Q96KJ9 171 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 RHBGQ9H310 441 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 GSTO2Q9H4Y5 243 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 TMEM45AQ9NWC5 275 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 CENPXA8MT69 81 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PITPNM1O00562 1244 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PDPK1O15530 556 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 MPC1LP0DKB6 136 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 HSD17B1P14061 328 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 C1QTNF8P60827 252 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SCARB2Q14108 478 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PPP4R4Q6NUP7 873 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC15A3Q8IY34 581 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 OR52J3Q8NH60 311 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 WDR36Q8NI36 951 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 EXOSC8Q96B26 276 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 FBXO10Q9UK96 956 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 COLEC10Q9Y6Z7 277 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 NR2F6P10588 404 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ANXA8P13928 327 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF12P17014 697 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 INHBCP55103 352 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 GPRC6AQ5T6X5 926 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 GET4Q7L5D6 327 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 KBTBD2Q8IY47 623 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ST13P5Q8NFI4 369 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ANKRD49Q8WVL7 239 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 NRG4Q8WWG1 115 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 ARHGAP39Q9C0H5 1083 aa10.51□□□□□ -0.73
LIMCH1-205ENST00000503057 PIK3CBP42338 1070 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 COX10Q12887 443 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PLEKHG6Q3KR16 790 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 C9orf64Q5T6V5 341 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 KIAA0319Q5VV43 1072 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ATG9BQ674R7 924 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF544Q6NX49 715 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ZBTB46Q86UZ6 589 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ZFAND4Q86XD8 727 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 GALNT13Q8IUC8 556 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 FUBP1Q96AE4 644 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CXCL16Q9H2A7 254 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PCTPQ9UKL6 214 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ARFGEF1Q9Y6D6 1849 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 LOC100130705A0A1B0GUX0 176 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 GADD45GO95257 159 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 IL12AP29459 219 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 SLBPQ14493 270 aaKnown RBP eCLIP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 LCN8Q6JVE9 175 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 MBOAT1Q6ZNC8 495 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CLEC14AQ86T13 490 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 RAB11FIP5Q9BXF6 653 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 KCNH6Q9H252 994 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PTGDR2Q9Y5Y4 395 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms