RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 LMOD3Q0VAK6 560 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 MOGAT2Q3SYC2 334 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 RNASEH2BQ5TBB1 312 aaKnown RBP3.1□□□□□ -1.91
HMGN1-218ENST00000490032 Q6ZR54 194 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 RSRC2Q7L4I2 434 aaKnown RBP3.1□□□□□ -1.91
HMGN1-218ENST00000490032 G2E3Q7L622 706 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 KBTBD6Q86V97 674 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 CDK20Q8IZL9 346 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 FBXL16Q8N461 479 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 C17orf47Q8NEP4 570 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 GPRC5AQ8NFJ5 357 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 OR6S1Q8NH40 331 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 FAM120BQ96EK7 910 aaKnown RBP3.1□□□□□ -1.91
HMGN1-218ENST00000490032 ZNF486Q96H40 463 aaPredicted RBP3.1□□□□□ -1.91
HMGN1-218ENST00000490032 MS4A10Q96PG2 267 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 CDRT15Q96T59 188 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 MED20Q9H944 212 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 TBC1D17Q9HA65 648 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 Q9N2K0 584 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 GKN1Q9NS71 199 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 FAM207AQ9NSI2 230 aaPredicted RBP3.1□□□□□ -1.91
HMGN1-218ENST00000490032 MUTYHQ9UIF7 546 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 STUB1Q9UNE7 303 aa3.1□□□□□ -1.91
HMGN1-218ENST00000490032 LOC102723996A0A087X1L8 192 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 GPR75-ASB3A0A0A6YYF3 556 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 EPHB6O15197 1021 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 ADAMDEC1O15204 470 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 TOMM70O94826 608 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 DDHD2O94830 711 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 IGHV3-13P01766 116 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 SLC2A2P11168 524 aaPredicted RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 GJA1P17302 382 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 HLA-FP30511 346 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 CA9Q16790 459 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 SYT14P1Q58G82 188 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 LCN1P1Q5VSP4 162 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 UGT3A1Q6NUS8 523 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 KIF6Q6ZMV9 814 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 C1orf122Q6ZSJ8 110 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 TMEM173Q86WV6 379 aaPredicted RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 GUF1Q8N442 669 aaKnown RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 NUP37Q8NFH4 326 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 APOBEC4Q8WW27 367 aaKnown RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 SSMEM1Q8WWF3 244 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 NECTIN4Q96NY8 510 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 GAL3ST4Q96RP7 486 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 MAK16Q9BXY0 300 aaKnown RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 TRPV4Q9HBA0 871 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 TEX10Q9NXF1 929 aaPredicted RBP3.09□□□□□ -1.91
HMGN1-218ENST00000490032 NDE1Q9NXR1 346 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 MAN1B1Q9UKM7 699 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 TNNQ9UQP3 1299 aa3.09□□□□□ -1.91
HMGN1-218ENST00000490032 ARID2Q68CP9 1835 aa3.09□□□□□ -1.92
HMGN1-218ENST00000490032 LOC100509620A0A075B734 347 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 A0A1W2PQ09 198 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 A8MU10 97 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 BCL2L11O43521 198 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 DOK2O60496 412 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 DANCRP0C864 163 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 CAPN3P20807 821 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 LHCGRP22888 699 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 NRIP1P48552 1158 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 KRTAP12-2P59991 146 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 MC1RQ01726 317 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 CREB5Q02930 508 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 EFTUD2Q15029 972 aaKnown RBP eCLIP3.08□□□□□ -1.923e-22■■■■■ 35.9
HMGN1-218ENST00000490032 MTHFSDQ2M296 383 aaKnown RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 C15orf59Q2T9L4 293 aaPredicted RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 SLC35D3Q5M8T2 416 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 SLC25A30Q5SVS4 291 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 SZRD1Q7Z422 152 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 TMPRSS11BQ86T26 416 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 CATSPERDQ86XM0 798 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 RPAP2Q8IXW5 612 aaPredicted RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 POC5Q8NA72 575 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 MIPOL1Q8TD10 442 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 NKX3-1Q99801 234 aaPredicted RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 TREX2Q9BQ50 279 aaPredicted RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 WNT5BQ9H1J7 359 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 EQTNQ9NQ60 294 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 ZNF215Q9UL58 517 aaPredicted RBP3.08□□□□□ -1.92
HMGN1-218ENST00000490032 CSNK1G3Q9Y6M4 447 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 ITIH6Q6UXX5 1313 aa3.08□□□□□ -1.92
HMGN1-218ENST00000490032 ZNF646O15015 1829 aaPredicted RBP3.07□□□□□ -1.92
HMGN1-218ENST00000490032 PRRC2AP48634 2157 aaKnown RBP3.07□□□□□ -1.92
HMGN1-218ENST00000490032 OBSCNQ5VST9 7968 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 ZBED4O75132 1171 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 TRUB2O95900 331 aaKnown RBP3.07□□□□□ -1.92
HMGN1-218ENST00000490032 KRTAP1-4P0C5Y4 121 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 DNAH10OSP0CZ25 163 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 SMIM18P0DKX4 95 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 GP1BBP13224 206 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 PTPN3P26045 913 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 CSTF2P33240 577 aaKnown RBP eCLIP3.07□□□□□ -1.92
HMGN1-218ENST00000490032 RXRGP48443 463 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 LIMK2P53671 638 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 MTF1Q14872 753 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 PCLAFQ15004 111 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 ZNF74Q16587 644 aa3.07□□□□□ -1.92
HMGN1-218ENST00000490032 UGT3A2Q3SY77 523 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms