RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 MAMLD1Q13495 774 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 PDLIM3Q53GG5 364 aaPredicted RBP3.29□□□□□ -1.88
SMC4-219ENST00000487747 ELFN2Q5R3F8 820 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 TMCO3Q6UWJ1 677 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 SLC34A3Q8N130 599 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.29□□□□□ -1.88
SMC4-219ENST00000487747 OR13C3Q8NGS6 347 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 CNRIP1Q96F85 164 aaPredicted RBP3.29□□□□□ -1.88
SMC4-219ENST00000487747 ATXN7L3BQ96GX2 97 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 FAM218AQ96MZ4 157 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 KIFC3Q9BVG8 833 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 SPATC1LQ9H0A9 340 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 Q9N2K0 584 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 FAM207AQ9NSI2 230 aaPredicted RBP3.29□□□□□ -1.88
SMC4-219ENST00000487747 STUB1Q9UNE7 303 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 ZNF148Q9UQR1 794 aa3.29□□□□□ -1.88
SMC4-219ENST00000487747 ZNF541Q9H0D2 1346 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 EPHB6O15197 1021 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 TRUB2O95900 331 aaKnown RBP3.28□□□□□ -1.88
SMC4-219ENST00000487747 MELTFP08582 738 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 THEGLP0DJG4 465 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 GP9P14770 177 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 MNDAP41218 407 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 ODF4Q2M2E3 257 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 UGT3A1Q6NUS8 523 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 FRRS1Q6ZNA5 592 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 GDPGP1Q6ZNW5 385 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 ADGRF2Q8IZF7 708 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 NEK1Q96PY6 1258 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 STAU2Q9NUL3 570 aaKnown RBP eCLIP3.28□□□□□ -1.88
SMC4-219ENST00000487747 SPHK1Q9NYA1 384 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 CTSZQ9UBR2 303 aa3.28□□□□□ -1.88
SMC4-219ENST00000487747 GON4LQ3T8J9 2241 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 TMEM221A6NGB7 291 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 C2orf81A6NN90 581 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 A8MXK9 166 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 SHISA9B4DS77 424 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 USO1O60763 962 aaKnown RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 LRCH4O75427 683 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 HOXD4P09016 255 aaPredicted RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 MAN1A1P33908 653 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 CLCN4P51793 760 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 SIRPAP78324 504 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 NR1D2Q14995 579 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 EFTUD2Q15029 972 aaKnown RBP eCLIP3.27□□□□□ -1.892e-8■□□□□ 10.7
SMC4-219ENST00000487747 EXT1Q16394 746 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 ZNF74Q16587 644 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 CA9Q16790 459 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 MTHFSDQ2M296 383 aaKnown RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 HIGD2BQ4VC39 106 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 LCN1P1Q5VSP4 162 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 MMS22LQ6ZRQ5 1243 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 TMPRSS11BQ86T26 416 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 CEP57Q86XR8 500 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 CCDC107Q8WV48 283 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 CCDC3Q9BQI4 270 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 OLA1Q9NTK5 396 aaKnown RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 THAP10Q9P2Z0 257 aaPredicted RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 SEC63Q9UGP8 760 aaKnown RBP3.27□□□□□ -1.89
SMC4-219ENST00000487747 GRIP1Q9Y3R0 1128 aa3.27□□□□□ -1.89
SMC4-219ENST00000487747 MYH14Q7Z406 1995 aaKnown RBP3.26□□□□□ -1.89
SMC4-219ENST00000487747 SNURFLB1AK76 121 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 FPGTO14772 594 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 PRAMEF11O60813 436 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 OR2T7P0C7T2 308 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 HLA-FP30511 346 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 TSFMP43897 325 aaKnown RBP3.26□□□□□ -1.89
SMC4-219ENST00000487747 MARCH9Q86YJ5 346 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 METTL4Q8N3J2 472 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 TTC39CQ8N584 583 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 DHX58Q96C10 678 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 FAM20AQ96MK3 541 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 SPAG5Q96R06 1193 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 NKX3-1Q99801 234 aaPredicted RBP3.26□□□□□ -1.89
SMC4-219ENST00000487747 CHST11Q9NPF2 352 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 KRT84Q9NSB2 600 aa3.26□□□□□ -1.89
SMC4-219ENST00000487747 WSB2Q9NYS7 404 aaPredicted RBP3.26□□□□□ -1.89
SMC4-219ENST00000487747 LOC105371242A0A075B767 164 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 A0A087WUV0 522 aaPredicted RBP3.25□□□□□ -1.89
SMC4-219ENST00000487747 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 SCGB1D1O95968 90 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 VPREB1P12018 145 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 PDHA2P29803 388 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 MAT1AQ00266 395 aaKnown RBP3.25□□□□□ -1.89
SMC4-219ENST00000487747 SYT14P1Q58G82 188 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 ZNF841Q6ZN19 808 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 G2E3Q7L622 706 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 CEACAM19Q7Z692 300 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 SLC25A42Q86VD7 318 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 TYMSOSQ8TAI1 123 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 PIGBQ92521 554 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 TOMM40LQ969M1 308 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 C1orf147Q96MC9 270 aaPredicted RBP3.25□□□□□ -1.89
SMC4-219ENST00000487747 CDRT15Q96T59 188 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 MIS12Q9H081 205 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 HEXA-AS1Q9H8Q6 139 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 B3GAT2Q9NPZ5 323 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 CELA1Q9UNI1 258 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 TRIM17Q9Y577 477 aa3.25□□□□□ -1.89
SMC4-219ENST00000487747 STYXL1Q9Y6J8 313 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms