RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-215	ENST00000487401	TARM1	B6A8C7	271 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	GOLGA8K	D6RF30	607 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	GOLGA8T	H3BQL2	631 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	ALPP	P05187	535 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	PAM	P19021	973 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	CHRM3	P20309	590 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	VARS	P26640	1264 aa	Known RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	BDKRB1	P46663	353 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	VPS41	P49754	854 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	GPS1	Q13098	491 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	GRM7	Q14831	915 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	DCAF10	Q5QP82	559 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	FCRL6	Q6DN72	434 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	JMJD6	Q6NYC1	403 aa	Predicted RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	MRPL14	Q6P1L8	145 aa	Known RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	CASC4	Q6P4E1	433 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	CNST	Q6PJW8	725 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	LRRC8A	Q8IWT6	810 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	SMAD5	Q99717	465 aa	Known RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	MIPEP	Q99797	713 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	CUTC	Q9NTM9	273 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	P4HTM	Q9NXG6	502 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	SAMD15	Q9P1V8	674 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	C5AR2	Q9P296	337 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	TSR3	Q9UJK0	312 aa	Known RBP	11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	SOX13	Q9UN79	622 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	MAP4K5	Q9Y4K4	846 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	NFS1	Q9Y697	457 aa		11.95	□□□□□ -0.5
SREBF1-215	ENST00000487401	TCRBV7S3A2	A0A539	114 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CLEC18A	A5D8T8	446 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	SRPX2	O60687	465 aa	Predicted RBP	11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	SORBS2	O94875	1100 aa	Known RBP	11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	ESR1	P03372	595 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	GNLY	P22749	145 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	ARNT	P27540	789 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	INPP5J	Q15735	1006 aa	Predicted RBP	11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	FAM214A	Q32MH5	1076 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CTSL3P	Q5NE16	218 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	FHL5	Q5TD97	284 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	ARMC3	Q5W041	872 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	NEPRO	Q6NW34	567 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CLEC18B	Q6UXF7	455 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	OVCH1	Q7RTY7	1134 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	PPP1R32	Q7Z5V6	425 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	GALNT16	Q8N428	558 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	RBMXL3	Q8N7X1	1067 aa	Known RBP	11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	PRELID2	Q8N945	189 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CLEC18C	Q8NCF0	446 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	LPGAT1	Q92604	370 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	PNPLA2	Q96AD5	504 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	BIRC8	Q96P09	236 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	ATP13A2	Q9NQ11	1180 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	IL1RAPL1	Q9NZN1	696 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	LUZP4	Q9P127	313 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CDC23	Q9UJX2	597 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	RUVBL2	Q9Y230	463 aa	Known RBP	11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	VPS9D1	Q9Y2B5	631 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	CRYL1	Q9Y2S2	319 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	FAM169A	Q9Y6X4	670 aa		11.94	□□□□□ -0.5
SREBF1-215	ENST00000487401	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	MAGEB16	A2A368	324 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	CTAGE9	A4FU28	777 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	SDR42E2	A6NKP2	422 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	CYSRT1	A8MQ03	144 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401		E5RI56	91 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	DSCR3	O14972	297 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	PRICKLE3	O43900	615 aa	Predicted RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	CNOT3	O75175	753 aa	Known RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	NIPSNAP2	O75323	286 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	AVIL	O75366	819 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	IPO13	O94829	963 aa	Known RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	KRT14	P02533	472 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	ALB	P02768	609 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	UMOD	P07911	640 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	MCM3	P25205	808 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	ATP5D	P30049	168 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	UQCRFS1	P47985	274 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	ADAR	P55265	1226 aa	Known RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	FOXL2	P58012	376 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	VSX2	P58304	361 aa	Predicted RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	SRSF1	Q07955	248 aa	Known RBP eCLIP	11.93	□□□□□ -0.5	1e-8	■□□□□ 9.9
SREBF1-215	ENST00000487401	THOC5	Q13769	683 aa	Known RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	MYBPC3	Q14896	1274 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	NAA25	Q14CX7	972 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	KCTD19	Q17RG1	926 aa	Predicted RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	TYSND1	Q2T9J0	566 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	CCSMST1	Q4G0I0	132 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	ANKRD20A4	Q4UJ75	823 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	WASHC2D	Q5SRD0	308 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	SLC6A19	Q695T7	634 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	KIAA0930	Q6ICG6	404 aa	Predicted RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	OR9A1P	Q8NGU1	263 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	HMGCLL1	Q8TB92	370 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	TM9SF4	Q92544	642 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	MAGOHB	Q96A72	148 aa	Known RBP	11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	FKBP10	Q96AY3	582 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	NACC2	Q96BF6	587 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	FAM136A	Q96C01	138 aa		11.93	□□□□□ -0.5
SREBF1-215	ENST00000487401	VPS50	Q96JG6	964 aa		11.93	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms