RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 AMZ2Q86W34 360 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 CMTR2Q8IYT2 770 aaKnown RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 OR4K1Q8NGD4 311 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 ZNF419Q96HQ0 510 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 ZSCAN5AQ9BUG6 496 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 AIG1Q9NVV5 245 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 SCHIP1Q9P0W5 487 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 IGLV3-10A0A075B6K4 115 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 LOC100506127A0A0U1RQW1 187 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 GSAPA4D1B5 854 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 PAK4O96013 591 aaPredicted RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 SERPINB10P48595 397 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 NADK2Q4G0N4 442 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 CXorf57Q6NSI4 855 aaKnown RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 FAM180BQ6P0A1 224 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 KLHDC10Q6PID8 442 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 ZNF783Q6ZMS7 281 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 KIAA2013Q8IYS2 634 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 NUDT8Q8WV74 236 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 TMBIM1Q969X1 311 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 CXorf40BQ96DE9 158 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 IL17FQ96PD4 163 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 TEX12Q9BXU0 123 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 REXO4Q9GZR2 422 aaKnown RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 LIN28AQ9H9Z2 209 aaKnown RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 CTPS2Q9NRF8 586 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 LHX3Q9UBR4 397 aa12.9□□□□□ -0.34
HMGN1-216ENST00000486741 RSL24D1Q9UHA3 163 aaKnown RBP12.9□□□□□ -0.34
HMGN1-216ENST00000486741 WASH3PC4AMC7 463 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 PCDH7O60245 1069 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 ENGP17813 658 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 SPINT3P49223 89 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 ATP1A4Q13733 1029 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 DEF8Q6ZN54 512 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 RNF175Q8N4F7 328 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 CELF5Q8N6W0 485 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 PHF10Q8WUB8 498 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 GPR78Q96P69 363 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 TNFRSF12AQ9NP84 129 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 OAS3Q9Y6K5 1087 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 FER1L6Q2WGJ9 1857 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 EBLN1P0CF75 366 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 ARL4DP49703 201 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 CLCNKAP51800 687 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 EEFSECP57772 596 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 ERVFC1P60507 584 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 MAPK11Q15759 364 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 CTSL3PQ5NE16 218 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 TNFAIP8L2Q6P589 184 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 LARP4Q71RC2 724 aaKnown RBP eCLIP12.89□□□□□ -0.352e-12■■■■■ 31.7
HMGN1-216ENST00000486741 RAD51AP1Q96B01 352 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 C12orf66Q96MD2 445 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 TTLL2Q9BWV7 592 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 SMURF2Q9HAU4 748 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 PHPT1Q9NRX4 125 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 RUVBL1Q9Y265 456 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 C1QAP02745 245 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 KLK1P06870 262 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 BCKDHAP12694 445 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 IST1P53990 364 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 DHCR24Q15392 516 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 HSF5Q4G112 596 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 USP39Q53GS9 565 aaKnown RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 BROXQ5VW32 411 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 GLB1L3Q8NCI6 653 aaPredicted RBP12.89□□□□□ -0.35
HMGN1-216ENST00000486741 SETD9Q8NE22 299 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 GPR150Q8NGU9 434 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 CCM2Q9BSQ5 444 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 HERC2P3Q9BVR0 1158 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 SLC7A5P2Q9GIP4 190 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 ENTPD4Q9Y227 616 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 KCNK6Q9Y257 313 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 TPRKBQ9Y3C4 175 aa12.89□□□□□ -0.35
HMGN1-216ENST00000486741 SERPINI2O75830 405 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 H6PDO95479 791 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CD1EP15812 388 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 FSHRP23945 695 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 IGFBP5P24593 272 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CXCR2P25025 360 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 MAPK12P53778 367 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 RPS13P62277 151 aaKnown RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CNPY1Q3B7I2 92 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 INTS11Q5TA45 600 aaKnown RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 KANK2Q63ZY3 851 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 ERMP1Q7Z2K6 904 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CPA6Q8N4T0 437 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 LKAAEAR1Q8TD35 194 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 SAMD4AQ9UPU9 718 aaKnown RBP12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TIMP1P01033 207 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 ASLP04424 464 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 RAP2AP10114 183 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 UBE3AQ05086 875 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 GRIN2CQ14957 1233 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 CYP27C1Q4G0S4 372 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TRIM40Q6P9F5 258 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 PKMYT1Q99640 499 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 AIF1LQ9BQI0 150 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 TAC3Q9UHF0 121 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 IKZF3Q9UKT9 509 aa12.88□□□□□ -0.35
HMGN1-216ENST00000486741 OGDHLQ9ULD0 1010 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms