RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 RDH14Q9HBH5 336 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 MID1IP1Q9NPA3 183 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 DMRT3Q9NQL9 472 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 MOCS1Q9NZB8 636 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 AURKCQ9UQB9 309 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 STK38LQ9Y2H1 464 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 SNX10Q9Y5X0 201 aa6.68□□□□□ -1.34
HDAC3-209ENST00000486618 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.68□□□□□ -1.34
HDAC3-209ENST00000486618 MED13Q9UHV7 2174 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 RNF103-CHMP3A0A140T963 221 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 MAGEB16A2A368 324 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TRIM49BA6NDI0 452 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 NUDT19A8MXV4 375 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 B4DGG1 531 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 UBE2CO00762 179 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TNFRSF10CO14798 259 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 B4GAT1O43505 415 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 RAD1O60671 282 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 VPS4BO75351 444 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 KLHL18O94889 574 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 GNA14O95837 355 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 CD160O95971 181 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 IGSF6O95976 241 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PNPP00491 289 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 FGF3P11487 239 aaPredicted RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PRKACBP22694 351 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ALDH4A1P30038 563 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PTGS2P35354 604 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ACAA2P42765 397 aaKnown RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 CLCN7P51798 805 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 KIAA1024LP59773 190 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 KCNJ10P78508 379 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PEX6Q13608 980 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 COTL1Q14019 142 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 GNA13Q14344 377 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 EFTUD2Q15029 972 aaKnown RBP eCLIP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SLC25A52Q3SY17 297 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 FLYWCH1Q4VC44 716 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 LRRC73Q5JTD7 316 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 CEP78Q5JTW2 689 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 DCAF12Q5T6F0 453 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ATPAF1Q5TC12 328 aaPredicted RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 FHL5Q5TD97 284 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SPECC1LQ69YQ0 1117 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PDPK2PQ6A1A2 396 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PAPD4Q6PIY7 484 aaKnown RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 C6orf89Q6UWU4 347 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TMPRSS9Q7Z410 1059 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ATG4DQ86TL0 474 aaPredicted RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 CDH26Q8IXH8 852 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 OR56A4Q8NGH8 313 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 HCAR2Q8TDS4 363 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TRPC4APQ8TEL6 797 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SLC5A11Q8WWX8 675 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 CASKIN2Q8WXE0 1202 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ART4Q93070 314 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 NT5C3BQ969T7 300 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PPP1R14BQ96C90 147 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 C11orf24Q96F05 449 aaPredicted RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PDXPQ96GD0 296 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TEFMQ96QE5 360 aaKnown RBP6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SH3GL2Q99962 352 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TTYH3Q9C0H2 523 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TRIM39Q9HCM9 518 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 PRDM7Q9NQW5 492 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 POLE3Q9NRF9 147 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SDHAF3Q9NRP4 125 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SERINC1Q9NRX5 453 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 SLC39A1Q9NY26 324 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ZNF212Q9UDV6 495 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 VPS4AQ9UN37 437 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 MFHAS1Q9Y4C4 1052 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 OR1A2Q9Y585 309 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 B3GALT1Q9Y5Z6 326 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 ITPR2Q14571 2701 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 DOPEY1Q5JWR5 2465 aa6.67□□□□□ -1.34
HDAC3-209ENST00000486618 TRAV20A0A0B4J274 112 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 IGHV5-10-1A0A0J9YXX1 117 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 A0A0U1RQK1 487 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 ZNF320A2RRD8 509 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 EFCAB7A8K855 629 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 MKRN2OSH3BPM6 223 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 I6L893 689 aaPredicted RBP6.66□□□□□ -1.34
HDAC3-209ENST00000486618 NKX2-8O15522 239 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 PROM1O43490 865 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 NIPSNAP2O75323 286 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 ERAL1O75616 437 aaKnown RBP6.66□□□□□ -1.34
HDAC3-209ENST00000486618 TUSC2O75896 110 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 TMEM63AO94886 807 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 IFNB1P01574 187 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 ERBB2P04626 1255 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 PCCBP05166 539 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 HOXC4P09017 264 aaPredicted RBP6.66□□□□□ -1.34
HDAC3-209ENST00000486618 PRKAR1AP10644 381 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 PECAM1P16284 738 aaPredicted RBP6.66□□□□□ -1.34
HDAC3-209ENST00000486618 TFE3P19532 575 aaPredicted RBP6.66□□□□□ -1.34
HDAC3-209ENST00000486618 TCN2P20062 427 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 ACVRL1P37023 503 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 STAT5AP42229 794 aa6.66□□□□□ -1.34
HDAC3-209ENST00000486618 GPR3P46089 330 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms