RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 GUF1Q8N442 669 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 NIPA2Q8N8Q9 360 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 OR10G8Q8NGN5 311 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 EXD1Q8NHP7 514 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 VANGL1Q8TAA9 524 aaPredicted RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 SMAP2Q8WU79 429 aaPredicted RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 SSMEM1Q8WWF3 244 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 LPGAT1Q92604 370 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 GTF3AQ92664 365 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 SLC22A18Q96BI1 424 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 DHX58Q96C10 678 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 TIGD1Q96MW7 591 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 NECTIN4Q96NY8 510 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 SDF4Q9BRK5 362 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 DGCR6LQ9BY27 220 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 PITPNM3Q9BZ71 974 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 UBA5Q9GZZ9 404 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 ADD3Q9UEY8 706 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 KLK13Q9UKR3 277 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 PPP1R3CQ9UQK1 317 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 NME7Q9Y5B8 376 aa3.29□□□□□ -1.88
VPS41-213ENST00000485955 SETD1AO15047 1707 aaKnown RBP3.29□□□□□ -1.88
VPS41-213ENST00000485955 hCG_1807616A0A1W2PRN6 198 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 C15orf61A6NNL5 157 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 EPM2AB3EWF7 344 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 UGT1A4P22310 534 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 MMP12P39900 470 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 RPL21P46778 160 aaKnown RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 NOVP48745 357 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 CSRP3P50461 194 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 GEMIN4P57678 1058 aaKnown RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 HNRNPKP61978 463 aaKnown RBP eCLIP3.28□□□□□ -1.88
VPS41-213ENST00000485955 MAT1AQ00266 395 aaKnown RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 LMOD3Q0VAK6 560 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 SIM2Q14190 667 aaPredicted RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 TNIP1Q15025 636 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 RALBP1Q15311 655 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 GLIPR1L2Q4G1C9 344 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 PAQR6Q6TCH4 344 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 PRSS33Q8NF86 280 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 CCDC107Q8WV48 283 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 SLCO2A1Q92959 643 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 NSUN4Q96CB9 384 aaKnown RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 ZNF486Q96H40 463 aaPredicted RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 NSMCE3Q96MG7 304 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 MS4A10Q96PG2 267 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 KRT12Q99456 494 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 THAP2Q9H0W7 228 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 UPF3AQ9H1J1 476 aaKnown RBP3.28□□□□□ -1.88
VPS41-213ENST00000485955 OPA3Q9H6K4 179 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 EQTNQ9NQ60 294 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 MAN2C1Q9NTJ4 1040 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 SPHK1Q9NYA1 384 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 TERF2IPQ9NYB0 399 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 THEGQ9P2T0 379 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 VPS28Q9UK41 221 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 TNNQ9UQP3 1299 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 GAPVD1Q14C86 1478 aa3.28□□□□□ -1.88
VPS41-213ENST00000485955 PDS5BQ9NTI5 1447 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 ADAMTS9Q9P2N4 1935 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 A0A1W2PR80 420 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 SOCS3O14543 225 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 MEIS2O14770 477 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 DANCRP0C864 163 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 DARSP14868 501 aaKnown RBP3.27□□□□□ -1.89
VPS41-213ENST00000485955 ACADSP16219 412 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 CDH3P22223 829 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 TLX1P31314 330 aaPredicted RBP3.27□□□□□ -1.89
VPS41-213ENST00000485955 STAT2P52630 851 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 NFATC2Q13469 925 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 ODF4Q2M2E3 257 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 UGT3A2Q3SY77 523 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 TAF1BQ53T94 588 aaPredicted RBP3.27□□□□□ -1.89
VPS41-213ENST00000485955 C2CD6Q53TS8 623 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 WLSQ5T9L3 541 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 NUDT13Q86X67 352 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 RPAP2Q8IXW5 612 aaPredicted RBP3.27□□□□□ -1.89
VPS41-213ENST00000485955 AMER3Q8N944 861 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 OR1L3Q8NH93 324 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 ZNF519Q8TB69 540 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 FAM20AQ96MK3 541 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 USP28Q96RU2 1077 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 LRRC61Q9BV99 259 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 SPHK2Q9NRA0 654 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 NUDT4Q9NZJ9 180 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 OR6C2Q9NZP2 312 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 FBXO2Q9UK22 296 aaPredicted RBP3.27□□□□□ -1.89
VPS41-213ENST00000485955 STUB1Q9UNE7 303 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 TRIM17Q9Y577 477 aa3.27□□□□□ -1.89
VPS41-213ENST00000485955 PCF11O94913 1555 aaKnown RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 CROCCQ5TZA2 2017 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 C2orf81A6NN90 581 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 KPNA7A9QM74 516 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 GLRA3O75311 464 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 CDK2AP2O75956 126 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 SEC24AO95486 1093 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 TRIM49P0CI25 452 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 TRIM49CP0CI26 452 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 PORP16435 677 aaPredicted RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 MPZP25189 248 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms