RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 SEC61A1P61619 476 aaKnown RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 TUBA1BP68363 451 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 TTC31Q49AM3 519 aaPredicted RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 CRYBG2Q8N1P7 616 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 MUC20Q8N307 709 aaPredicted RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 LNX1Q8TBB1 728 aaPredicted RBP4.83□□□□□ -1.64
UPF3B-203ENST00000478840 ASB5Q8WWX0 329 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 HMCESQ96FZ2 354 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 ATG101Q9BSB4 218 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 SPXQ9BT56 116 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 CSTL1Q9H114 145 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 SPHK1Q9NYA1 384 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 IL19Q9UHD0 177 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 KCNS2Q9ULS6 477 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 STX8Q9UNK0 236 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 TTC3P53804 2025 aa4.83□□□□□ -1.64
UPF3B-203ENST00000478840 A0A0G2JPF8 293 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 A0A1W2PRB8 838 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 ILVBLA1L0T0 632 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 HNRNPCL3B7ZW38 293 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 PLOD2O00469 737 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TTI1O43156 1089 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 VEGFDO43915 354 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 NME6O75414 186 aaPredicted RBP4.82□□□□□ -1.64
UPF3B-203ENST00000478840 DDHD2O94830 711 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 HMOX1P09601 288 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 HNRNPCL4P0DMR1 293 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 P4HA1P13674 534 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 CKMT2P17540 419 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 EPORP19235 508 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TYMPP19971 482 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 ABCG1P45844 678 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 NT5C2P49902 561 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 HTR6P50406 440 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 THOP1P52888 689 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 SLC12A3P55017 1021 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 NME5P56597 212 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 C21orf58P58505 322 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 FOLH1Q04609 750 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 ARHGAP1Q07960 439 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 ILF2Q12905 390 aaKnown RBP4.82□□□□□ -1.64
UPF3B-203ENST00000478840 CYP4A22Q5TCH4 519 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 PODNL1Q6PEZ8 512 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 BTNL8Q6UX41 500 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 IL17RELQ6ZVW7 336 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 ANKRD33Q7Z3H0 272 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 PIGWQ7Z7B1 504 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 LONP2Q86WA8 852 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 PEX5LQ8IYB4 626 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 APCDD1Q8J025 514 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 EEF2KMTQ96G04 330 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 C5orf30Q96GV9 206 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 FAM71F1Q96KD3 344 aaPredicted RBP4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TMEM237Q96Q45 408 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 OSBPL8Q9BZF1 889 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TRIM7Q9C029 511 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TNMDQ9H2S6 317 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 FKRPQ9H9S5 495 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 EBF2Q9HAK2 575 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 RNPEPL1Q9HAU8 725 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 TRPC7Q9HCX4 862 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 OCIAD1Q9NX40 245 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 FBXW2Q9UKT8 454 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 JRKLQ9Y4A0 524 aa4.82□□□□□ -1.64
UPF3B-203ENST00000478840 MAGEA13PA6NCF6 341 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 C4orf47A7E2U8 309 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 CTDSPLO15194 276 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 PPFIA2O75334 1257 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 GLCEO94923 617 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 CRYABP02511 175 aaKnown RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 KRT19P08727 400 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 ANKRD34CP0C6C1 535 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 FCGR1AP12314 374 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 IL10P22301 178 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 CTNNB1P35222 781 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 RPS18P62269 152 aaKnown RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 RPL24P83731 157 aaKnown RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 IL1RL1Q01638 556 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 ZNF415Q09FC8 603 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 WASHC5Q12768 1159 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 PPA1Q15181 289 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 SPDYCQ5MJ68 293 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 FAM171BQ6P995 826 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 PRSS55Q6UWB4 352 aaPredicted RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 PIWIL4Q7Z3Z4 852 aaKnown RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 AMIGO1Q86WK6 493 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 CCDC83Q8IWF9 413 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 CFAP206Q8IYR0 622 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 KCNH5Q8NCM2 988 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 TMED6Q8WW62 240 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 RSPH1Q8WYR4 309 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 LINGO1Q96FE5 620 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 C17orf77Q96MU5 243 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 GAL3ST4Q96RP7 486 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 SNX25Q9H3E2 840 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 AKIRIN1Q9H9L7 192 aaPredicted RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 PRMT8Q9NR22 394 aaPredicted RBP4.81□□□□□ -1.64
UPF3B-203ENST00000478840 OLFML3Q9NRN5 406 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 DNAJC11Q9NVH1 559 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 ANO10Q9NW15 660 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms