RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	GPS2	Q13227	327 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	KCNAB2	Q13303	367 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	HIF1A	Q16665	826 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	PTCHD3	Q3KNS1	767 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	LINC00303	Q3SY05	128 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ACSBG2	Q5FVE4	666 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZC3H12B	Q5HYM0	836 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	C1orf189	Q5VU69	101 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	MLIP	Q5VWP3	458 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	TMEM135	Q86UB9	458 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	SYTL1	Q8IYJ3	562 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF655	Q8N720	491 aa	Predicted RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	EXD3	Q8N9H8	876 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	LMNTD1	Q8N9Z9	388 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	TTC29	Q8NA56	475 aa	Predicted RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	SIGLEC10	Q96LC7	697 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	GPR21	Q99679	349 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	MIPEP	Q99797	713 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	EBNA1BP2	Q99848	306 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	C17orf62	Q9BQA9	187 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ACAT2	Q9BWD1	397 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	GPR87	Q9BY21	358 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	CHST8	Q9H2A9	424 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ADNP	Q9H2P0	1102 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	SPATA7	Q9P0W8	599 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	G3BP2	Q9UN86	482 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	SRPK3	Q9UPE1	567 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	PLCL2	Q9UPR0	1127 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	FARSA	Q9Y285	508 aa	Known RBP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	KLHL20	Q9Y2M5	609 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	NEU2	Q9Y3R4	380 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	AP1M2	Q9Y6Q5	423 aa		11.11	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZCWPW2	A0A1B0GU75	182 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZSCAN9	O15535	394 aa	Predicted RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZBTB14	O43829	449 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	PTPN4	P29074	926 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ATP5D	P30049	168 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	CARS	P49589	748 aa	Known RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	PDAP1	Q13442	181 aa	Known RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	NAA25	Q14CX7	972 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ZNF789	Q5FWF6	425 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	TLDC1	Q6P9B6	456 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	FIGLA	Q6QHK4	219 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ADCK2	Q7Z695	626 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	SYVN1	Q86TM6	617 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	CREG2	Q8IUH2	290 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ANKMY2	Q8IV38	441 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	DSEL	Q8IZU8	1212 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	ENDOV	Q8N8Q3	282 aa	Known RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	GPATCH11	Q8N954	259 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	BBOF1	Q8ND07	529 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	OR9A1P	Q8NGU1	263 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	C9orf43	Q8TAL5	461 aa	Predicted RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	DENND1A	Q8TEH3	1009 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	DLG3	Q92796	817 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	INPP5D	Q92835	1189 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	SLCO2A1	Q92959	643 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	CERS2	Q96G23	380 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	NDN	Q99608	321 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	SPRTN	Q9H040	489 aa	Predicted RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	DPH5	Q9H2P9	285 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	FAM60A	Q9NP50	221 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	UTP6	Q9NYH9	597 aa	Known RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	IFT80	Q9P2H3	777 aa	Predicted RBP	11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	NUP210L	Q5VU65	1888 aa		11.1	□□□□□ -0.63
CPNE1-222	ENST00000473373	KRT87P	A6NCN2	255 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	MKRN2OS	H3BPM6	223 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	HAUS5	O94927	633 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	CCNDBP1	O95273	360 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	FKBP9	O95302	570 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	EIF2S1	P05198	315 aa	Known RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	ENO3	P13929	434 aa	Predicted RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	SAT1	P21673	171 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	MCM3	P25205	808 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	PSMB5	P28074	263 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	PEBP1	P30086	187 aa	Known RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	ELK3	P41970	407 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	GRIA3	P42263	894 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	PTGIR	P43119	386 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	MAGEA3	P43357	314 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	NFKB2	Q00653	900 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	C2orf54	Q08AI8	447 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	PDIA2	Q13087	525 aa	Known RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	SLC9A5	Q14940	896 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	CCSMST1	Q4G0I0	132 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	LRRC8E	Q6NSJ5	796 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	SUSD1	Q6UWL2	747 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	SYT10	Q6XYQ8	523 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	CAPN12	Q6ZSI9	719 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	UBE2R2	Q712K3	238 aa	Predicted RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	MAATS1	Q7Z4T9	603 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	PTRH1	Q86Y79	214 aa	Known RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	CPNE9	Q8IYJ1	553 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	MYO1H	Q8N1T3	1032 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	LINC01555	Q8NAE3	123 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	KCNJ9	Q92806	393 aa		11.09	□□□□□ -0.63
CPNE1-222	ENST00000473373	ALKBH8	Q96BT7	664 aa	Known RBP	11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms