RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 TTLL10Q6ZVT0 673 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 LDB1Q86U70 411 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-208ENST00000470076 LRRC6Q86X45 466 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 KRT222Q8N1A0 295 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 MPP5Q8N3R9 675 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 C2orf73Q8N5S3 287 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-208ENST00000470076 TM9SF4Q92544 642 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 RAD51AP1Q96B01 352 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 IL17FQ96PD4 163 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 IL22Q9GZX6 179 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 P2RY12Q9H244 342 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 ZNF552Q9H707 407 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-208ENST00000470076 WDR54Q9H977 334 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 ATP13A2Q9NQ11 1180 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 ENAMQ9NRM1 1142 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 SLC22A11Q9NSA0 550 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 MARCH4Q9P2E8 410 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-208ENST00000470076 CIDEBQ9UHD4 219 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 GNPTGQ9UJJ9 305 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 GUCA1BQ9UMX6 200 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 NOTCH2Q04721 2471 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 NBPF19A0A087WUL8 3843 aa16.79■□□□□ 0.28
COL7A1-208ENST00000470076 AGPSO00116 658 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 DSCR3O14972 297 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 ALBP02768 609 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 RPL22P35268 128 aaKnown RBP16.78■□□□□ 0.28
COL7A1-208ENST00000470076 SESN2P58004 480 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-208ENST00000470076 GRM7Q14831 915 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 RPS6KA1Q15418 735 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 PLEKHN1Q494U1 663 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-208ENST00000470076 DRICH1Q6PGQ1 229 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-208ENST00000470076 FIGLAQ6QHK4 219 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 OVCH1Q7RTY7 1134 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 TAX1BP1Q86VP1 789 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 GAS2L3Q86XJ1 694 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 RAB42Q8N4Z0 105 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 SPC24Q8NBT2 197 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 ZUFSPQ96AP4 578 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 TREX1Q9NSU2 369 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 PLEKHB1Q9UF11 243 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-208ENST00000470076 DOPEY1Q5JWR5 2465 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 CNTRLQ7Z7A1 2325 aa16.78■□□□□ 0.28
COL7A1-208ENST00000470076 DOCK10Q96BY6 2186 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 TARM1B6A8C7 271 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 PRICKLE3O43900 615 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 SEMA7AO75326 666 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 NDUFS3O75489 264 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 ZSCAN5DPP0CG00 497 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 ITGAXP20702 1163 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 RPS3P23396 243 aaKnown RBP eCLIP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 MMP11P24347 488 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 NPY2RP49146 381 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 FOXL2P58012 376 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 AIMP2Q13155 320 aaKnown RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 C4orf17Q53FE4 359 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 MEI1Q5TIA1 1274 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 FCRL6Q6DN72 434 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 OTOAQ7RTW8 1153 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 ZADH2Q8N4Q0 377 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 LMNTD1Q8N9Z9 388 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 SNRNP40Q96DI7 357 aaKnown RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 ZNF285Q96NJ3 590 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 SLC26A1Q9H2B4 701 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 CUTCQ9NTM9 273 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 IL1RAPL1Q9NZN1 696 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 BFARQ9NZS9 450 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 NXT1Q9UKK6 140 aaKnown RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 TTC7AQ9ULT0 858 aaPredicted RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 DRG1Q9Y295 367 aaKnown RBP16.77■□□□□ 0.28
COL7A1-208ENST00000470076 ZKSCAN5Q9Y2L8 839 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 CENPEQ02224 2701 aa16.77■□□□□ 0.28
COL7A1-208ENST00000470076 GOLGA6L6A8MZA4 724 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 SRPX2O60687 465 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 C1orf105O95561 183 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 CCNFP41002 786 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 GRIA3P42263 894 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 CRADDP78560 199 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 BASP1P80723 227 aaKnown RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 MRPL49Q13405 166 aaKnown RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 SIX1Q15475 284 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 NKG7Q16617 165 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 EIF2S3LQ2VIR3 472 aaKnown RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 FAM214AQ32MH5 1076 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 TTC29Q8NA56 475 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 HMGCLL1Q8TB92 370 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 SKA2Q8WVK7 121 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 FOPNLQ96NB1 174 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 SELENOSQ9BQE4 189 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 ILKAPQ9H0C8 392 aaPredicted RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 MRM3Q9HC36 420 aaKnown RBP16.76■□□□□ 0.27
COL7A1-208ENST00000470076 CDC23Q9UJX2 597 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 KLK4Q9Y5K2 254 aa16.76■□□□□ 0.27
COL7A1-208ENST00000470076 FITM1A5D6W6 292 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 DDAH2O95865 285 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 MCM3P25205 808 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 NMBRP28336 390 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 GSTA5Q7RTV2 222 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 SDCCAG8Q86SQ7 713 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-208ENST00000470076 TMEM151BQ8IW70 566 aa16.75■□□□□ 0.27
COL7A1-208ENST00000470076 CISD2Q8N5K1 135 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms