RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 HCRTR1O43613 425 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CEACAM4O75871 244 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 SLCO2B1O94956 709 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 FKBP9O95302 570 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 EIF2S1P05198 315 aaKnown RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 ITGAXP20702 1163 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 ITGA3P26006 1051 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CXCR5P32302 372 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 KCNJ1P48048 391 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CDK16Q00536 496 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 THOC5Q13769 683 aaKnown RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 NAA25Q14CX7 972 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 DCAF10Q5QP82 559 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 YOD1Q5VVQ6 348 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 PAPD7Q5XG87 772 aaKnown RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 ZNF385CQ66K41 422 aaPredicted RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CES3Q6UWW8 571 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 GALNT16Q8N428 558 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 LMNTD1Q8N9Z9 388 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 LINC01555Q8NAE3 123 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 FLVCR1-AS1Q8TAF5 88 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 PNPLA2Q96AD5 504 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 MLXIPLQ9NP71 852 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 ATP13A2Q9NQ11 1180 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CUTCQ9NTM9 273 aa16.83■□□□□ 0.28
COL7A1-206ENST00000466591 RUVBL2Q9Y230 463 aaKnown RBP16.83■□□□□ 0.28
COL7A1-206ENST00000466591 CTAGE9A4FU28 777 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 KLF7O75840 302 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 UQCRHP07919 91 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 RPS3P23396 243 aaKnown RBP eCLIP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 CMPK1P30085 196 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 VSX2P58304 361 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 GPS1Q13098 491 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 INPP5JQ15735 1006 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 FAM214AQ32MH5 1076 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 LRRC8BQ6P9F7 803 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 IQCKQ8N0W5 287 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 ZADH2Q8N4Q0 377 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 METTL27Q8N6F8 245 aaPredicted RBP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 MFSD3Q96ES6 412 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 MIPEPQ99797 713 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 MRM3Q9HC36 420 aaKnown RBP16.82■□□□□ 0.28
COL7A1-206ENST00000466591 FAM114A2Q9NRY5 505 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 TREX1Q9NSU2 369 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 C5AR2Q9P296 337 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 CRYL1Q9Y2S2 319 aa16.82■□□□□ 0.28
COL7A1-206ENST00000466591 BLACEA4D250 179 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 DSCR3O14972 297 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 C1orf105O95561 183 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 ESR1P03372 595 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 CTSBP07858 339 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 TPSB2P20231 275 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 RPA3P35244 121 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 UQCRFS1P47985 274 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 GABRA4P48169 554 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 ELOAQ14241 798 aaKnown RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 MYBPC3Q14896 1274 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 SIX1Q15475 284 aaPredicted RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 TPSAB1Q15661 275 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 RBBP7Q16576 425 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 TTLL9Q3SXZ7 439 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 SLC6A19Q695T7 634 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 ZUFSPQ96AP4 578 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 FKBP10Q96AY3 582 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 TCF12Q99081 682 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 SMAD5Q99717 465 aaKnown RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 ACAT2Q9BWD1 397 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 YIPF2Q9BWQ6 316 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 P2RY12Q9H244 342 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 ABCF3Q9NUQ8 709 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 UTP6Q9NYH9 597 aaKnown RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 NXT1Q9UKK6 140 aaKnown RBP16.81■□□□□ 0.28
COL7A1-206ENST00000466591 SOX13Q9UN79 622 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 NFS1Q9Y697 457 aa16.81■□□□□ 0.28
COL7A1-206ENST00000466591 UBR5O95071 2799 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 A0A0J9YVX5 310 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 ZNF839A8K0R7 811 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 AGPSO00116 658 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 NIPSNAP2O75323 286 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 VPS26AO75436 327 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 SYF2O95926 243 aaKnown RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 SPTBP11277 2137 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 GP1BBP13224 206 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 MCM3P25205 808 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 OCA2Q04671 838 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 AIMP2Q13155 320 aaKnown RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 ZNF669Q96BR6 464 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 NAP1L3Q99457 506 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 KIFC1Q9BW19 673 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 SOX17Q9H6I2 414 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 IL1RAPL1Q9NZN1 696 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 SPATA7Q9P0W8 599 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 ZC3H7BQ9UGR2 993 aaKnown RBP16.8■□□□□ 0.28
COL7A1-206ENST00000466591 MAP4K5Q9Y4K4 846 aa16.8■□□□□ 0.28
COL7A1-206ENST00000466591 HYKKA2RU49 373 aa16.79■□□□□ 0.28
COL7A1-206ENST00000466591 TARM1B6A8C7 271 aa16.79■□□□□ 0.28
COL7A1-206ENST00000466591 SRPX2O60687 465 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-206ENST00000466591 SORBS2O94875 1100 aaKnown RBP16.79■□□□□ 0.28
COL7A1-206ENST00000466591 CCNDBP1O95273 360 aa16.79■□□□□ 0.28
COL7A1-206ENST00000466591 KRT14P02533 472 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms