RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 AFTPHQ6ULP2 937 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 ZNF534Q76KX8 674 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 DNAAF3Q8N9W5 541 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 OR2L8Q8NGY9 312 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 DNAJB14Q8TBM8 379 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 ASZ1Q8WWH4 475 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 ZNF778Q96MU6 729 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 ZNF285Q96NJ3 590 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 PANX2Q96RD6 677 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 TTC1Q99614 292 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.68■■□□□ 1.06
USP4-208ENST00000464168 SVILO95425 2214 aa21.68■■□□□ 1.06
USP4-208ENST00000464168 IQCF5A8MTL0 148 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 F8W8V4 182 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 S1PR4O95977 384 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 ACVR1Q04771 509 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 SEMA3AQ14563 771 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 GRM7Q14831 915 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 ZC3H12BQ5HYM0 836 aaKnown RBP21.67■■□□□ 1.06
USP4-208ENST00000464168 YOD1Q5VVQ6 348 aaPredicted RBP21.67■■□□□ 1.06
USP4-208ENST00000464168 SHISA6Q6ZSJ9 500 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 TAX1BP1Q86VP1 789 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 DCUN1D3Q8IWE4 304 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 PARP9Q8IXQ6 854 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 OR4L1Q8NH43 312 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 GRHL3Q8TE85 626 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 CARD6Q9BX69 1037 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 MRM3Q9HC36 420 aaKnown RBP21.67■■□□□ 1.06
USP4-208ENST00000464168 CTSFQ9UBX1 484 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 AMFRQ9UKV5 643 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 RIMKLBQ9ULI2 386 aa21.67■■□□□ 1.06
USP4-208ENST00000464168 PACSIN2Q9UNF0 486 aaPredicted RBP21.67■■□□□ 1.06
USP4-208ENST00000464168 TEP1Q99973 2627 aaKnown RBP21.67■■□□□ 1.06
USP4-208ENST00000464168 ERI2A8K979 691 aaKnown RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 E2F3O00716 465 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 PRICKLE3O43900 615 aaPredicted RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 SLCO2B1O94956 709 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 RPN2P04844 631 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 GRIA1P42261 906 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 TSFMP43897 325 aaKnown RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 OR1D4P47884 311 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 SF1Q15637 639 aaKnown RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 TCTE1Q5JU00 501 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 UNC5DQ6UXZ4 953 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 RAD9BQ6WBX8 426 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 PEX26Q7Z412 305 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 TICAM1Q8IUC6 712 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 DTWD1Q8N5C7 304 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 OR11G2Q8NGC1 345 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 OR6P1Q8NGX9 317 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 COG1Q8WTW3 980 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 LHPPQ9H008 270 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 SOX17Q9H6I2 414 aaPredicted RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 ETNK1Q9HBU6 452 aa21.66■■□□□ 1.06
USP4-208ENST00000464168 INTS7Q9NVH2 962 aaKnown RBP21.66■■□□□ 1.06
USP4-208ENST00000464168 FITM1A5D6W6 292 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 VSTM2BA6NLU5 285 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 RASGRF2O14827 1237 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 LRRTM2O43300 516 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 CTSVO60911 334 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 SUN1O94901 812 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 IPO7O95373 1038 aaKnown RBP21.65■■□□□ 1.06
USP4-208ENST00000464168 GAS8O95995 478 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 ADRA1DP25100 572 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 AOAHP28039 575 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 Q0VFX4 171 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 ZNF169Q14929 603 aaPredicted RBP21.65■■□□□ 1.06
USP4-208ENST00000464168 IRAK1BP1Q5VVH5 260 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 C1QL3Q5VWW1 255 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 METTL27Q8N6F8 245 aaPredicted RBP21.65■■□□□ 1.06
USP4-208ENST00000464168 UBL4BQ8N7F7 174 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 ACRBPQ8NEB7 543 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 FAR1Q8WVX9 515 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 ZUFSPQ96AP4 578 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 SELENOSQ9BQE4 189 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 MESP1Q9BRJ9 268 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 TSSK1BQ9BXA7 367 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 SEMA3GQ9NS98 782 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 NXT1Q9UKK6 140 aaKnown RBP21.65■■□□□ 1.06
USP4-208ENST00000464168 OSGIN2Q9Y236 505 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 APCP25054 2843 aa21.65■■□□□ 1.06
USP4-208ENST00000464168 TARM1B6A8C7 271 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 MED26O95402 600 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 APOA4P06727 396 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 CDC16Q13042 620 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 RBBP7Q16576 425 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 FAM214AQ32MH5 1076 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 TUBB8Q3ZCM7 444 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 FASTKD1Q53R41 847 aaKnown RBP21.64■■□□□ 1.05
USP4-208ENST00000464168 LDB1Q86U70 411 aaPredicted RBP21.64■■□□□ 1.05
USP4-208ENST00000464168 KRT222Q8N1A0 295 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 ATG4AQ8WYN0 398 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 THOC3Q96J01 351 aaKnown RBP21.64■■□□□ 1.05
USP4-208ENST00000464168 CNDP1Q96KN2 507 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 IL1RAPL1Q9NZN1 696 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 SLC39A10Q9ULF5 831 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 MAU2Q9Y6X3 613 aa21.64■■□□□ 1.05
USP4-208ENST00000464168 NUP210LQ5VU65 1888 aa21.63■■□□□ 1.05
USP4-208ENST00000464168 MIF4GDA9UHW6 222 aaKnown RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 EDN3P14138 238 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms