RNA–Protein interactions for RNA: ENST00000452483.1

HMGB3P21-201, Transcript of high mobility group box 3 pseudogene 21, humanhuman

BASIC

Gene HMGB3P21, Length 547 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P21-201ENST00000452483 TOX4O94842 621 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ECDO95905 644 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 LDLRP01130 860 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CYP1A1P04798 512 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZNF888P0CJ79 500 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SPP1P10451 314 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CYP19A1P11511 503 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 APEHP13798 732 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 FOSL2P15408 326 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ITGAXP20702 1163 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SLC6A2P23975 617 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ACADLP28330 430 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 PPIFP30405 207 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RPL9P32969 192 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CHI3L1P36222 383 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ALDH3B1P43353 468 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 GZMKP49863 264 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 KCNQ1P51787 676 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 GPR143P51810 404 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CLDN8P56748 225 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 XIAPP98170 497 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZNF844Q08AG5 666 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RESTQ13127 1097 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 STK38Q15208 465 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 STXBP2Q15833 593 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZSCAN26Q16670 478 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 HNRNPA1L2Q32P51 320 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CDONQ4KMG0 1287 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 HIKESHIQ53FT3 197 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SOWAHCQ53LP3 525 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RABGAP1LQ5R372 815 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 DCAF12L2Q5VW00 463 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ERASQ7Z444 233 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 MRPL10Q7Z7H8 261 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 FAM124AQ86V42 546 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 TMEM126BQ8IUX1 230 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZDHHC23Q8IYP9 409 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZBTB2Q8N680 514 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 BCORP1Q8N888 145 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SPATA4Q8NEY3 305 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RDM1Q8NG50 284 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 OR14L1PQ8NHC6 308 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 EXD1Q8NHP7 514 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 OSCP1Q8WVF1 389 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SOCS4Q8WXH5 440 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RHBDF1Q96CC6 855 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 LCORQ96JN0 433 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 MS4A10Q96PG2 267 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CYTH2Q99418 400 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SF3B5Q9BWJ5 86 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SPATA16Q9BXB7 569 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 BBS2Q9BXC9 721 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 TDRD1Q9BXT4 1180 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 GPR87Q9BY21 358 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CADM1Q9BY67 442 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 TSPYL1Q9H0U9 437 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 SIRPDQ9H106 197 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 BLZF1Q9H2G9 400 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CUEDC2Q9H467 287 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 MED20Q9H944 212 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 WDR76Q9H967 626 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 MEAF6Q9HAF1 191 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 UPF2Q9HAU5 1272 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 CPNE5Q9HCH3 593 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 EQTNQ9NQ60 294 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 DDX28Q9NUL7 540 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 PEF1Q9UBV8 284 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ATPIF1Q9UII2 106 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 FZD10Q9ULW2 581 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 KCNJ14Q9UNX9 436 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 NIP7Q9Y221 180 aaKnown RBP eCLIP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 FOXA2Q9Y261 457 aaPredicted RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 VWA7Q9Y334 891 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 BZW2Q9Y6E2 419 aaKnown RBP4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 RNF215Q9Y6U7 377 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 FER1L4A9Z1Z3 1794 aa4.29□□□□□ -1.72
HMGB3P21-201ENST00000452483 ABCC4O15439 1325 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 SF3B1O75533 1304 aaKnown RBP eCLIP4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 A0A0U1RQV5 110 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 C1orf226A1L170 272 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 PCP4L1A6NKN8 68 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 UBE2Q2LH0YL09 131 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 NDUFS4O43181 175 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZNF264O43296 627 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 CHMP2AO43633 222 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 ECE2O60344 883 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 TGM6O95932 706 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 MBD3O95983 291 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 MT-CYBP00156 380 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 FESP07332 822 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 SPATA31D3P0C874 917 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZCCHC18P0CG32 403 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 STAG3L2P0CL84 134 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 POU2F1P14859 743 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 ZNF37AP17032 561 aaPredicted RBP4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 PPP2R1AP30153 589 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 RYKP34925 604 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 ATP5C1P36542 298 aaKnown RBP4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 FMO5P49326 533 aa4.28□□□□□ -1.72
HMGB3P21-201ENST00000452483 HSD11B2P80365 405 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms