RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 RNASEH2BQ5TBB1 312 aaKnown RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 FCRL6Q6DN72 434 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 ZNF470Q6ECI4 717 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 FIGLAQ6QHK4 219 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 MCATQ8IVS2 390 aaKnown RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 RAB42Q8N4Z0 105 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 ZBTB2Q8N680 514 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 ZNF285Q96NJ3 590 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 TRMT1Q9NXH9 659 aaKnown RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 IL1RAPL1Q9NZN1 696 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 SPATA7Q9P0W8 599 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 RUVBL2Q9Y230 463 aaKnown RBP18.64■□□□□ 0.57
USP40-207ENST00000450940 KLHL20Q9Y2M5 609 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 MED16Q9Y2X0 877 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 FAM169AQ9Y6X4 670 aa18.64■□□□□ 0.57
USP40-207ENST00000450940 C9J4A7 227 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 PYCARD-AS1I3L0S3 204 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 PSIP1O75475 530 aaKnown RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 ONECUT2O95948 504 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 CD63P08962 238 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 ERGP11308 486 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 PTGIRP43119 386 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 DCDP81605 110 aaKnown RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 TLE1Q04724 770 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 ACSBG2Q5FVE4 666 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 FAM69BQ5VUD6 431 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 ZNF549Q6P9A3 640 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 CNSTQ6PJW8 725 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 NEK10Q6ZWH5 1172 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 ZNF655Q8N720 491 aaPredicted RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 OR2A1Q8NGT9 310 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 SKA2Q8WVK7 121 aaPredicted RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 ING2Q9H160 280 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 CLMPQ9H6B4 373 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 PCYOX1Q9UHG3 505 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 PCDHGA9Q9Y5G4 932 aaKnown RBP18.63■□□□□ 0.57
USP40-207ENST00000450940 PCSK5Q92824 1860 aa18.63■□□□□ 0.57
USP40-207ENST00000450940 TNRC6AQ8NDV7 1962 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 FLNBO75369 2602 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 SETXQ7Z333 2677 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 A0A1W2PPV9 198 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 CEACAM4O75871 244 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 DNAJB5O75953 348 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 ZIC2O95409 532 aaPredicted RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 TCP1P17987 556 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 GRIA3P42263 894 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 KLRB1Q12918 225 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 CTBP1Q13363 440 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 THOC5Q13769 683 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 LONRF1Q17RB8 773 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 ZC3H12BQ5HYM0 836 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 PAPD7Q5XG87 772 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 CPZQ66K79 652 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 ASB18Q6ZVZ8 466 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 TAX1BP1Q86VP1 789 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 DENND6AQ8IWF6 608 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 CALML6Q8TD86 181 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 FAM136AQ96C01 138 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 NDC1Q9BTX1 674 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 TRIM4Q9C037 500 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 EPN3Q9H201 632 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 DHCR7Q9UBM7 475 aaKnown RBP18.62■□□□□ 0.57
USP40-207ENST00000450940 PADI2Q9Y2J8 665 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 HEATR5BQ9P2D3 2071 aa18.62■□□□□ 0.57
USP40-207ENST00000450940 KRT87PA6NCN2 255 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 ARGFXA6NJG6 315 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 ARHGEF33A8MVX0 844 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 E5RI56 91 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 MYO1CO00159 1063 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 PDGFAP04085 211 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 NR1D1P20393 614 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 IVDP26440 423 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 ARSFP54793 590 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 PTK6Q13882 451 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 SSPNQ14714 243 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 ARHGAP19Q14CB8 494 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 PPP1R7Q15435 360 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 KLHL38Q2WGJ6 581 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 NKAIN1Q4KMZ8 207 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 TCTE1Q5JU00 501 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 C1orf189Q5VU69 101 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 YOD1Q5VVQ6 348 aaPredicted RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 MRPL14Q6P1L8 145 aaKnown RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 FBXO15Q8NCQ5 510 aaPredicted RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 OR2L3Q8NG85 312 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 OR9A1PQ8NGU1 263 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 DLG3Q92796 817 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 KCNJ9Q92806 393 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 PDLIM2Q96JY6 352 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 SLC30A3Q99726 388 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 DDX47Q9H0S4 455 aaKnown RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 FBXO6Q9NRD1 293 aaPredicted RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 C20orf96Q9NUD7 363 aaPredicted RBP18.61■□□□□ 0.57
USP40-207ENST00000450940 TXLNGQ9NUQ3 528 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 FBXO5Q9UKT4 447 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 MAD1L1Q9Y6D9 718 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 COMMD10Q9Y6G5 202 aa18.61■□□□□ 0.57
USP40-207ENST00000450940 CTAGE9A4FU28 777 aa18.6■□□□□ 0.57
USP40-207ENST00000450940 FITM1A5D6W6 292 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms