RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 HIST1H2ABP04908 130 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TYRP1P17643 537 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 PRPS1L1P21108 318 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 S100A5P33763 92 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 MLLT3P42568 568 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 PTDSS1P48651 473 aaKnown RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ARF5P84085 180 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 EPS8Q12929 822 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 BIKQ13323 160 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 FRMD7Q6ZUT3 714 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 HIST3H2AQ7L7L0 130 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 CAMKVQ8NCB2 501 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OR10A6Q8NH74 314 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 HIST1H2ACQ93077 130 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 MRPL38Q96DV4 380 aaKnown RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 MRPL48Q96GC5 212 aaKnown RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF317Q96PQ6 595 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 KCNA7Q96RP8 456 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 KLHL25Q9H0H3 589 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 MAT2BQ9NZL9 334 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 PTGES3LE9PB15 166 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SLC22A2O15244 555 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OR10H3O60404 316 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 PFDN1O60925 122 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 STATHP02808 62 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OXTRP30559 389 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TMED1Q13445 227 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 C1DQ13901 141 aaKnown RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 KCNC3Q14003 757 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SPIN4Q56A73 249 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 PRRT3Q5FWE3 981 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 KIAA1161Q6NSJ0 714 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF605Q86T29 641 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TBC1D21Q8IYX1 336 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SAMD14Q8IZD0 417 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 RHEBL1Q8TAI7 183 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SMAD5Q99717 465 aaKnown RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 DPYSL5Q9BPU6 564 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 RSPH9Q9H1X1 276 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 IL17CQ9P0M4 197 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 C3orf18Q9UK00 162 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 DLEC1Q9Y238 1755 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 AXIN1O15169 862 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 LAMTOR5O43504 91 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 KLK1P06870 262 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 MPC1LP0DKB6 136 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 NCF4Q15080 339 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TANGO2Q6ICL3 276 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 CDHR3Q6ZTQ4 885 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ABHD13Q7L211 337 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OR2T34Q8NGX1 318 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 RPLP0P6Q8NHW5 317 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 VANGL1Q8TAA9 524 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ARMC5Q96C12 935 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 CNPPD1Q9BV87 410 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 BOCQ9BWV1 1114 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OR1A2Q9Y585 309 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TIPRLO75663 272 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SEMA4FO95754 770 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 FGF3P11487 239 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 FDXRP22570 491 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ITPKBP27987 946 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 CCR10P46092 362 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 RGRP47804 291 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 SOX9P48436 509 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 GALK1P51570 392 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ELOCQ15369 112 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TAZQ16635 292 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 FAAH2Q6GMR7 532 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 ABTB1Q969K4 478 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.22□□□□□ -1.25
SYNE1-213ENST00000448038 LMAN1LQ9HAT1 526 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 IL26Q9NPH9 171 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 USE1Q9NZ43 259 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 C15orf41Q9Y2V0 281 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 TPRKBQ9Y3C4 175 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 OARD1Q9Y530 152 aa7.22□□□□□ -1.25
SYNE1-213ENST00000448038 H3BNC9 293 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 CDH1P12830 882 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 HMGA1P17096 107 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 VARSP26640 1264 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 CDKN1CP49918 316 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 TAS2R41P59536 307 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 C1orf61Q13536 156 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 SUZ12Q15022 739 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 INAVAQ3KP66 663 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 DEPDC1Q5TB30 811 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 TTC23Q5W5X9 447 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 FAM20CQ8IXL6 584 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 ADGRG2Q8IZP9 1017 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 C8orf59Q8N0T1 100 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 FBXO15Q8NCQ5 510 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 VN1R2Q8NFZ6 395 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 OR52L1Q8NGH7 329 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MAPK15Q8TD08 544 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 BCL7CQ8WUZ0 217 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MYLIPQ8WY64 445 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 NCSTNQ92542 709 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 VPS35Q96QK1 796 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 CPEB1Q9BZB8 566 aaKnown RBP7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms