RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RPS18P62269 152 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 AIMP2Q13155 320 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 SNX1Q13596 522 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 IGFBP7Q16270 282 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 CCDC38Q502W7 563 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 MEI1Q5TIA1 1274 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 PRMT9Q6P2P2 845 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 FBXO38Q6PIJ6 1188 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 FIGLAQ6QHK4 219 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 OVCH1Q7RTY7 1134 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 IQCKQ8N0W5 287 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ZBTB2Q8N680 514 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SPC24Q8NBT2 197 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SLC38A9Q8NBW4 561 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 OR13J1Q8NGT2 312 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 OR2Y1Q8NGV0 311 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 CFAP61Q8NHU2 1237 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ADAMTS17Q8TE56 1095 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SKA2Q8WVK7 121 aaPredicted RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 C1orf54Q8WWF1 131 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SMAD5Q99717 465 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 SPOCK3Q9BQ16 436 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 CCDC68Q9H2F9 335 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 WDR54Q9H977 334 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 AGPAT4Q9NRZ5 378 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SAMD15Q9P1V8 674 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 KLHL42Q9P2K6 505 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 R3HDM2Q9Y2K5 976 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 MAP4K5Q9Y4K4 846 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 COMMD10Q9Y6G5 202 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 KRTAP4-8A0A0G2JLE6 195 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 A0A1B0GX78 115 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 DSCR3O14972 297 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ESR1P03372 595 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ERVK-10P10266 1014 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 PKMP14618 531 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 TPSB2P20231 275 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 CCR7P32248 378 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 GDF10P55107 478 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SESN2P58004 480 aaPredicted RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 BASP1P80723 227 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 OCA2Q04671 838 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 MYBPC3Q14896 1274 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ARHGAP19Q14CB8 494 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 TPSAB1Q15661 275 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 PTCHD3Q3KNS1 767 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ANKRD20A4Q4UJ75 823 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ZNF789Q5FWF6 425 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 LRRC8BQ6P9F7 803 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 FAM198BQ6UWH4 519 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 TMEM135Q86UB9 458 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 LMNTD2Q8IXW0 634 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ZNF655Q8N720 491 aaPredicted RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 LMNTD1Q8N9Z9 388 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 HMGCLL1Q8TB92 370 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 CALML6Q8TD86 181 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 EBNA1BP2Q99848 306 aaKnown RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 SELENOSQ9BQE4 189 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 KRTAP9-9Q9BYP9 154 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 KRTAP9-4Q9BYQ2 154 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 SPRTNQ9H040 489 aaPredicted RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 AKIRIN1Q9H9L7 192 aaPredicted RBP7.48□□□□□ -1.21
CD44-211ENST00000442151 SEMA3GQ9NS98 782 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 MAP10Q9P2G4 905 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 PLAAQ9Y263 795 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 PRSS21Q9Y6M0 314 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 ZNF462Q96JM2 2506 aa7.48□□□□□ -1.21
CD44-211ENST00000442151 MGAQ8IWI9 3026 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 A6NL46 340 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 E5RI56 91 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 AGFG2O95081 481 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 CATP04040 527 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 CAPN1P07384 714 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 CBSLP0DN79 551 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 MLNP12872 115 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 PVRP15151 417 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 CHRM3P20309 590 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 FDXRP22570 491 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 RPL22P35268 128 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 CBSP35520 551 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 MLLT10P55197 1068 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 ADARP55265 1226 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 IL10RAQ13651 578 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 THOC5Q13769 683 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 LRRC8EQ6NSJ5 796 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 UGT3A1Q6NUS8 523 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 JMJD6Q6NYC1 403 aaPredicted RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 BRICD5Q6PL45 260 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 IGFL3Q6UXB1 125 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 NEK10Q6ZWH5 1172 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 TMEM139Q8IV31 216 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 GALNT16Q8N428 558 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 TAB3Q8N5C8 712 aaPredicted RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 GPATCH11Q8N954 259 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 FDCSPQ8NFU4 85 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 ATG4AQ8WYN0 398 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 PBKQ96KB5 322 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 GBP5Q96PP8 586 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 DESI2Q9BSY9 194 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 KIFC1Q9BW19 673 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms