RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TTC23LQ6PF05 361 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 FIGLAQ6QHK4 219 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 UNC5DQ6UXZ4 953 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 SPC24Q8NBT2 197 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 SLC22A18Q96BI1 424 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 CNDP1Q96KN2 507 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 RANBP9Q96S59 729 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 SELENOSQ9BQE4 189 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 RBSNQ9H1K0 784 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 ZBTB20Q9HC78 741 aaPredicted RBP13.93□□□□□ -0.18
SDC1-204ENST00000429035 CUTCQ9NTM9 273 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 MARCH4Q9P2E8 410 aaPredicted RBP13.93□□□□□ -0.18
SDC1-204ENST00000429035 GNPTGQ9UJJ9 305 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 RUVBL2Q9Y230 463 aaKnown RBP13.93□□□□□ -0.18
SDC1-204ENST00000429035 MAU2Q9Y6X3 613 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 FAM169AQ9Y6X4 670 aa13.93□□□□□ -0.18
SDC1-204ENST00000429035 UTP20O75691 2785 aaKnown RBP13.93□□□□□ -0.18
SDC1-204ENST00000429035 CNTRLQ7Z7A1 2325 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 KRT87PA6NCN2 255 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 ANKUB1A6NFN9 424 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PRMT5O14744 637 aaPredicted RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 RASGRF2O14827 1237 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 DSCR3O14972 297 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 SUN1O94901 812 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 DDAH2O95865 285 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PIM1P11309 404 aaPredicted RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 PSMA3P25788 255 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PSMB5P28074 263 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 STIP1P31948 543 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 VSX2P58304 361 aaPredicted RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 CRADDP78560 199 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 BASP1P80723 227 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 AIMP2Q13155 320 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 GRM7Q14831 915 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 OASLQ15646 514 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 HIF1AQ16665 826 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 ZC3H12BQ5HYM0 836 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 CNSTQ6PJW8 725 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PRSS58Q8IYP2 241 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 RAB42Q8N4Z0 105 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 DTWD1Q8N5C7 304 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 OR2L8Q8NGY9 312 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 DENND1AQ8TEH3 1009 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 INPP5DQ92835 1189 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 FKBP10Q96AY3 582 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 HES6Q96HZ4 224 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PANX3Q96QZ0 392 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 MIPEPQ99797 713 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 WDR77Q9BQA1 342 aaPredicted RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 CARD6Q9BX69 1037 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 RAB11FIP5Q9BXF6 653 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 SLC22A11Q9NSA0 550 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 PAK5Q9P286 719 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 CTSFQ9UBX1 484 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 ERRFI1Q9UJM3 462 aaPredicted RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 CSAG2Q9Y5P2 127 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 COPG1Q9Y678 874 aaKnown RBP13.92□□□□□ -0.18
SDC1-204ENST00000429035 NFS1Q9Y697 457 aa13.92□□□□□ -0.18
SDC1-204ENST00000429035 NDUFS3O75489 264 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 UQCRHP07919 91 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 ZSCAN5DPP0CG00 497 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 ITGAXP20702 1163 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 COL8A1P27658 744 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 OR1D4P47884 311 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 TTPAP49638 278 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 TERF1P54274 439 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 EIF3BP55884 814 aaKnown RBP13.91□□□□□ -0.18
SDC1-204ENST00000429035 TSTA3Q13630 321 aaPredicted RBP13.91□□□□□ -0.18
SDC1-204ENST00000429035 NKG7Q16617 165 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 TUBB8Q3ZCM7 444 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 TCTE1Q5JU00 501 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 PRAMEF13Q5VWM6 474 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 ZNF787Q6DD87 383 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 FCRL6Q6DN72 434 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 COX15Q7KZN9 410 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 NLRP9Q7RTR0 991 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 CUZD1Q86UP6 607 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 SLC13A5Q86YT5 568 aaPredicted RBP13.91□□□□□ -0.18
SDC1-204ENST00000429035 TMEM139Q8IV31 216 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 PARP9Q8IXQ6 854 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 FAM136AQ96C01 138 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 C5orf34Q96MH7 638 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 FOPNLQ96NB1 174 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 MENTQ9BUN1 341 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 RIMKLBQ9ULI2 386 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 TTC7AQ9ULT0 858 aaPredicted RBP13.91□□□□□ -0.18
SDC1-204ENST00000429035 PCDHGA10Q9Y5H3 936 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 ZGRF1Q86YA3 2104 aa13.91□□□□□ -0.18
SDC1-204ENST00000429035 DIDO1Q9BTC0 2240 aaKnown RBP13.91□□□□□ -0.18
SDC1-204ENST00000429035 A0A0J9YVX5 310 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 CD3EAPO15446 510 aaKnown RBP13.9□□□□□ -0.18
SDC1-204ENST00000429035 GPC4O75487 556 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 EIF2S1P05198 315 aaKnown RBP13.9□□□□□ -0.18
SDC1-204ENST00000429035 ERVK-10P10266 1014 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 MMP11P24347 488 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 AOAHP28039 575 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 ACVR1Q04771 509 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 GRB7Q14451 532 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 CCSMST1Q4G0I0 132 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 OTOAQ7RTW8 1153 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms