RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 GNPTGQ9UJJ9 305 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 SLC25A13Q9UJS0 675 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 RAB26Q9ULW5 256 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 ERVK-11Q9UQG0 969 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 ALPK2Q86TB3 2170 aa8.15□□□□□ -1.1
CD44-208ENST00000428726 GBF1Q92538 1859 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 A0A1W2PP18 115 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 H7C0S8 307 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 HTRA2O43464 458 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 MOSPD3O75425 235 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 CAPNS1P04632 268 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 C8BP07358 591 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 HSPA8P11142 646 aaKnown RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 BCKDHAP12694 445 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 IDO1P14902 403 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 LAG3P18627 525 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 EPORP19235 508 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 DGKAP23743 735 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 PSMA4P25789 261 aaKnown RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 ALDH4A1P30038 563 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 HSPA13P48723 471 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 TPD52P55327 224 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 IRF8Q02556 426 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 CAMK1Q14012 370 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 SIM2Q14190 667 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 MYBPC3Q14896 1274 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 FNDC3BQ53EP0 1204 aaKnown RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 INO80DQ53TQ3 878 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 C2orf27AQ580R0 203 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 RAET1GQ6H3X3 334 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 GDPD4Q6W3E5 623 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 Q6ZPB1 254 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 USP45Q70EL2 814 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 EFL1Q7Z2Z2 1120 aaKnown RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 DGLUCYQ7Z3D6 616 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 TICAM1Q8IUC6 712 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 PSD4Q8NDX1 1056 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 FAM162AQ96A26 154 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 ZNF689Q96CS4 500 aaPredicted RBP8.15□□□□□ -1.11
CD44-208ENST00000428726 AP2M1Q96CW1 435 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 RHNO1Q9BSD3 238 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 C1QTNF3Q9BXJ4 246 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 KLHL25Q9H0H3 589 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 ZBP1Q9H171 429 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 LRTM1Q9HBL6 345 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 MAGEE1Q9HCI5 957 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 SPHK2Q9NRA0 654 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 SLC25A37Q9NYZ2 338 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 ATXN10Q9UBB4 475 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 RAPGEFL1Q9UHV5 662 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 ADGRE2Q9UHX3 823 aa8.15□□□□□ -1.11
CD44-208ENST00000428726 A0A0J9YVX5 310 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 GNG14A0A1W2PPG7 69 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 PPM1DO15297 605 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 KLK8O60259 260 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 KCNH1O95259 989 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 LATS1O95835 1130 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 TIMP1P01033 207 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 ELFN1P0C7U0 828 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CTSAP10619 480 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 POU2F1P14859 743 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 MSH3P20585 1137 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 PSMB5P28074 263 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 NRIP1P48552 1158 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CSNK1DP48730 415 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 SPINT3P49223 89 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 ERVK-8P63133 956 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 ATP1A4Q13733 1029 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 NFE2L1Q14494 772 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 PRMT9Q6P2P2 845 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 ANKRD33Q7Z3H0 272 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 SHISA5Q8N114 240 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CACTIN-AS1Q8N1I8 211 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 MARVELD2Q8N4S9 558 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 DRAXINQ8NBI3 349 aaPredicted RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 PLA2G15Q8NCC3 412 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 FLCNQ8NFG4 579 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 SCRN2Q96FV2 425 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 HOPXQ9BPY8 73 aaPredicted RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 NUSAP1Q9BXS6 441 aaKnown RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 CD244Q9BZW8 370 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 C11orf49Q9H6J7 331 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 DNAAF2Q9NVR5 837 aaKnown RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 STOX2Q9P2F5 926 aaPredicted RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 PRKAG2Q9UGJ0 569 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 STOML2Q9UJZ1 356 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CNOT11Q9UKZ1 510 aaKnown RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 CA5BQ9Y2D0 317 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 OR1A2Q9Y585 309 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 ANKRD33BA6NCL7 494 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 YY2O15391 372 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 AP1G1O43747 822 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 LZTS3O60299 673 aaPredicted RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 PCDH8O95206 1070 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 MATN4O95460 622 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CDH2P19022 906 aaPredicted RBP8.14□□□□□ -1.11
CD44-208ENST00000428726 CD22P20273 847 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 CD72P21854 359 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 IL10P22301 178 aa8.14□□□□□ -1.11
CD44-208ENST00000428726 OR1E2P47887 323 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms