RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RPL9P32969 192 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 ATP5C1P36542 298 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 CSKP41240 450 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 TUBA4AP68366 448 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CYP4F8P98187 520 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CDC42EP1Q00587 391 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 CCDC103Q8IW40 242 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 MFSD2AQ8NA29 543 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 OR13F1Q8NGS4 319 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 IRGQQ8WZA9 623 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 GTF2H4Q92759 462 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SH3KBP1Q96B97 665 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SLC39A13Q96H72 371 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 DERL2Q9GZP9 239 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SLC52A3Q9NQ40 469 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 GREB1Q4ZG55 1949 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 F5P12259 2224 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 MTMR11A4FU01 709 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 J3KTA2 159 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 AREL1O15033 823 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 ABCB7O75027 752 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 PRKAR2AP13861 404 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 ATF6P18850 670 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 ZNF140P52738 457 aaPredicted RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 RPS26P62854 115 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 VLDLRP98155 873 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 C8orf82Q6P1X6 216 aaPredicted RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 PRMT9Q6P2P2 845 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 NCCRP1Q6ZVX7 275 aaPredicted RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 PTCD2Q8WV60 388 aaKnown RBP8.44□□□□□ -1.06
USP40-203ENST00000427112 IL4I1Q96RQ9 567 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 SIRT5Q9NXA8 310 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 LRFN2Q9ULH4 789 aa8.44□□□□□ -1.06
USP40-203ENST00000427112 GNG14A0A1W2PPG7 69 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ACSL4O60488 711 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SOX14O95416 240 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 KRT8P05787 483 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 GSTT2P0CG29 244 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 GSTT2BP0CG30 244 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CD36P16671 472 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 DDX5P17844 614 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 CYP2C18P33260 490 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 PREPP48147 710 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CREMQ03060 361 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SMARCB1Q12824 385 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 MBTPS1Q14703 1052 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 MAPRE1Q15691 268 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 CCSMST1Q4G0I0 132 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CACHD1Q5VU97 1274 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 LAIR2Q6ISS4 152 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ZNF551Q7Z340 670 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 SH3YL1Q96HL8 342 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 FBXO44Q9H4M3 255 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ZDHHC6Q9H6R6 413 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 C5AR2Q9P296 337 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CNOT11Q9UKZ1 510 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 SCN2AQ99250 2005 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 PABPN1LA6NDY0 278 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 HAS3O00219 553 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 FCGR1AP12314 374 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SPNP16150 400 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 GGT1P19440 569 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 TCEA1P23193 301 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 DCKP27707 260 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SOAT1P35610 550 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CRATP43155 626 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 GNPDA1P46926 289 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SLC11A1P49279 550 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ARF5P84085 180 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 HKDC1Q2TB90 917 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ARTNQ5T4W7 220 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 B3GNT8Q7Z7M8 397 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 TTC30BQ8N4P2 665 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 NKAPQ8N5F7 415 aaKnown RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 TMEM203Q969S6 136 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ZHX1-C8orf76Q96EF9 292 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ARSGQ96EG1 525 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 UHRF1Q96T88 793 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 RAD18Q9NS91 495 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 NLE1Q9NVX2 485 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 SLC35F4A4IF30 521 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 PRRG1O14668 218 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 RAD51BO15315 384 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SERPINB7O75635 380 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 UGT2B4P06133 528 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CKMP06732 381 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 FGF4P08620 206 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 IGFBP1P08833 259 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 ENO2P09104 434 aaPredicted RBP8.43□□□□□ -1.06
USP40-203ENST00000427112 CKMT1AP12532 417 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 COX7A2P14406 83 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 ENGP17813 658 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 RPIAP49247 311 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SLC11A2P49281 568 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 CDK5R2Q13319 367 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 PCBP2Q15366 365 aaKnown RBP eCLIP8.43□□□□□ -1.06
USP40-203ENST00000427112 USP41Q3LFD5 358 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 BORAQ6PGQ7 559 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 TRAF7Q6Q0C0 670 aa8.43□□□□□ -1.06
USP40-203ENST00000427112 SBSNQ6UWP8 590 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms