RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ANXA6P08133 673 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 UROSP10746 265 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 HGFP14210 728 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 ARRB1P49407 418 aaPredicted RBP16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 RAB28P51157 221 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SH3BP2P78314 561 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 PRAMEF14Q5SWL7 426 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 PRAMEF13Q5VWM6 474 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 ACAD11Q709F0 780 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SYVN1Q86TM6 617 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SYT12Q8IV01 421 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 KLHDC8AQ8IYD2 350 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 AVL9Q8NBF6 648 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 OR52B6Q8NGF0 335 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 ZDHHC1Q8WTX9 485 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 C10orf82Q8WW14 230 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SMPDL3AQ92484 453 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 NUSAP1Q9BXS6 441 aaKnown RBP16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 PCBD2Q9H0N5 130 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 KIR3DX1Q9H7L2 352 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 POT1Q9NUX5 634 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 GPRC5BQ9NZH0 403 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SCHIP1Q9P0W5 487 aaPredicted RBP16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 PCDHGA2Q9Y5H1 932 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 KCNE2Q9Y6J6 123 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 KMT2EQ8IZD2 1858 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 ARHGEF17Q96PE2 2063 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 SDK1Q7Z5N4 2213 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 TRBV23OR9-2A0A075B6M9 112 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 TMEM233B4DJY2 109 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 MATN2O00339 956 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 OR7A17O14581 309 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 AQP9O43315 295 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 OR4F21O95013 312 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CLDN9O95484 217 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 EML2O95834 649 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CFIP05156 583 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CELA2BP08218 269 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 EBLN1P0CF75 366 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 SHMT2P34897 504 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 HOXD12P35452 270 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 IRF8Q02556 426 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CLEC6AQ6EIG7 209 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 ATG14Q6ZNE5 492 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 SLC9B2Q86UD5 537 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 DDIASQ8IXT1 998 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 SDR16C5Q8N3Y7 309 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CHCHD4Q8N4Q1 142 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 CDYL2Q8N8U2 506 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 ZNF548Q8NEK5 533 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 OR4F6Q8NGB9 312 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 OR52E1Q8NGJ3 308 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 MAPK15Q8TD08 544 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 ZC3H10Q96K80 434 aaKnown RBP16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 HAUS8Q9BT25 410 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 NTMT1Q9BV86 223 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 NUF2Q9BZD4 464 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 ERVMER34-1Q9H9K5 563 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 TRPS1Q9UHF7 1281 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 PILRBQ9UKJ0 227 aa16.6■□□□□ 0.25
CCDC28B-202ENST00000421922 A6NCN8 305 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 E7ENX8 843 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 PPP6CO00743 305 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 DCTN3O75935 186 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 FGF4P08620 206 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 GNAZP19086 355 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 PKLRP30613 574 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 TAP2Q03519 686 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 TRAF3Q13114 568 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 GRB7Q14451 532 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 CYP2A13Q16696 494 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 XKR6Q5GH73 641 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 KANK2Q63ZY3 851 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 IYDQ6PHW0 289 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 SUSD1Q6UWL2 747 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 DCBLD1Q8N8Z6 715 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 CEP76Q8TAP6 659 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 METTL6Q8TCB7 284 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 SETD7Q8WTS6 366 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 TWIST2Q8WVJ9 160 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 LCN9Q8WX39 176 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 NELL1Q92832 810 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 PPP1R36Q96LQ0 422 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 CDK15Q96Q40 435 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 INTS7Q9NVH2 962 aaKnown RBP16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 CPNE7Q9UBL6 633 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 RAB23Q9ULC3 237 aa16.59■□□□□ 0.25
CCDC28B-202ENST00000421922 UGDHO60701 494 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 CAPN1P07384 714 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 ERGP11308 486 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 ALOX15P16050 662 aaPredicted RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 XRCC1P18887 633 aaPredicted RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 PRDX3P30048 256 aaKnown RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 SLC19A1P41440 591 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 CTSKP43235 329 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 ERVPABLB-1P60509 514 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 CHIT1Q13231 466 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 PCM1Q15154 2024 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 DUOXA1Q1HG43 343 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 KIF19Q2TAC6 998 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms