RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 LIMD1Q9UGP4 676 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 DOLKQ9UPQ8 538 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SLC22A14Q9Y267 594 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 MED16Q9Y2X0 877 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 POLR3HQ9Y535 204 aaPredicted RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 SPACA6W5XKT8 324 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 GNG14A0A1W2PPG7 69 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 C1GALT1C1LP0DN25 315 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 CTSEP14091 401 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TIAL1Q01085 375 aaKnown RBP eCLIP8.16□□□□□ -1.1
USP54-203ENST00000418501 DDX39BQ13838 428 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 TAF11Q15544 211 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 MAVSQ7Z434 540 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TRIM46Q7Z4K8 759 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 LKAAEAR1Q8TD35 194 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 FOXJ1Q92949 421 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 VPS33AQ96AX1 596 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PPWD1Q96BP3 646 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 APOOQ9BUR5 198 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 FAIM2Q9BWQ8 316 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TEX101Q9BY14 249 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PLA2G2FQ9BZM2 168 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 BRINP2Q9C0B6 783 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 MAGEL2Q9UJ55 1249 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SARDHQ9UL12 918 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PCDHB11Q9Y5F2 797 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TCRBV21S2A2A0A5A6 115 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 H0Y3Z8 333 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 PRAMEF26H0Y7S4 382 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 RASGRP1O95267 797 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SHMT2P34897 504 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 CCR10P46092 362 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 KCNC1P48547 511 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 CCR5P51681 352 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SESN3P58005 492 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 TRAF3Q13114 568 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SLC44A4Q53GD3 710 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 ERICH5Q6P6B1 374 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 SPRED2Q7Z698 418 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 DHDDSQ86SQ9 333 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 RBM12BQ8IXT5 1001 aaKnown RBP8.16□□□□□ -1.1
USP54-203ENST00000418501 MINDY1Q8N5J2 469 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 CDC26Q8NHZ8 85 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 MSLNLQ96KJ4 702 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 C12orf66Q96MD2 445 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 IER2Q9BTL4 223 aa8.16□□□□□ -1.1
USP54-203ENST00000418501 EEDO75530 441 aaKnown RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 C1orf105O95561 183 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 ZNF8P17098 575 aaPredicted RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 VARSP26640 1264 aaKnown RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 PIK3CBP42338 1070 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 CTSCP53634 463 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 MTTPP55157 894 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 PWP1Q13610 501 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 IRF4Q15306 451 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 XKR7Q5GH72 579 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 AGBL4Q5VU57 503 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 BLOC1S3Q6QNY0 202 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 TMPRSS11BQ86T26 416 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 KLHDC8AQ8IYD2 350 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 OXR1Q8N573 874 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 OR56A3Q8NH54 315 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 ASB9Q96DX5 294 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 ADAMTS6Q9UKP5 1117 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 ARHGEF33A8MVX0 844 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 TBX10O75333 385 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 IFNA14P01570 189 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 JAK1P23458 1154 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 SLC6A12P48065 614 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 PGGT1BP53609 377 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 TRIM25Q14258 630 aaKnown RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 MLF2Q15773 248 aaPredicted RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 PAOXQ6QHF9 649 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 CHST15Q7LFX5 561 aaPredicted RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 CACUL1Q86Y37 369 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP54-203ENST00000418501 ENDOVQ8N8Q3 282 aaKnown RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 ICA1LQ8NDH6 482 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 ZFPM2Q8WW38 1151 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 MARK4Q96L34 752 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 PKP4Q99569 1192 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 UGT2B28Q9BY64 529 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 DENND2DQ9H6A0 471 aaPredicted RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 KCNK12Q9HB15 430 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 NDRG2Q9UN36 371 aaKnown RBP8.15□□□□□ -1.1
USP54-203ENST00000418501 SNX7Q9UNH6 387 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 RNF11Q9Y3C5 154 aa8.15□□□□□ -1.1
USP54-203ENST00000418501 EPOPA6NHQ4 379 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 AQP12BA6NM10 295 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 H0YIV9 168 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 SLC31A1O15431 190 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 MAP3K13O43283 966 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 SEMA4FO95754 770 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 PAK4O96013 591 aaPredicted RBP8.15□□□□□ -1.11
USP54-203ENST00000418501 COX7A2P14406 83 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 KIR3DL1P43629 444 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 BDKRB1P46663 353 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 PREPP48147 710 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 TRPC1P48995 793 aa8.15□□□□□ -1.11
USP54-203ENST00000418501 B4GALNT1Q00973 533 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms