RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 EPGNQ6UW88 154 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 FAM72BQ86X60 149 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 GLIS1Q8NBF1 620 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 ZNF540Q8NDQ6 660 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 PIGXQ8TBF5 258 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 RFKQ969G6 155 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 CLIP3Q96DZ5 547 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 VMP1Q96GC9 406 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 S100A13Q99584 98 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 PAAF1Q9BRP4 392 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 DGKBQ9Y6T7 804 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 GPR89AB7ZAQ6 455 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 SERPINI2O75830 405 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 SMNDC1O75940 238 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRF-205ENST00000414879 RSL1D1O76021 490 aaKnown RBP11.69□□□□□ -0.54
PTPRF-205ENST00000414879 GPR89BP0CG08 455 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 ANXA8P13928 327 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 HNF1BP35680 557 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 IRF9Q00978 393 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 DSC1Q08554 894 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 GALNT1Q10472 559 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-205ENST00000414879 ZNF311Q5JNZ3 666 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 EMC10Q5UCC4 262 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 TMIGD1Q6UXZ0 262 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.69□□□□□ -0.548e-7■■■■□ 20.5
PTPRF-205ENST00000414879 DPY19L3Q6ZPD9 716 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 WDR48Q8TAF3 677 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 SMPD3Q9NY59 655 aaPredicted RBP11.69□□□□□ -0.54
PTPRF-205ENST00000414879 DNAJB9Q9UBS3 223 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 PCDHGA4Q9Y5G9 962 aa11.69□□□□□ -0.54
PTPRF-205ENST00000414879 C9J4A7 227 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ENDOUP21128 410 aaKnown RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 DRD1P21728 446 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ZNF730Q6ZMV8 503 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ADGRD2Q7Z7M1 963 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ZCCHC7Q8N3Z6 543 aaKnown RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 OR56A1Q8NGH5 318 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 EEF1AKMT1Q8WVE0 214 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 TRIM39Q9HCM9 518 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 GPRC5BQ9NZH0 403 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FAM25AB3EWG3 89 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FAM25CB3EWG5 89 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FAM25GB3EWG6 89 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 H0YGN5 161 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ACADVLP49748 655 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FAM189BP81408 668 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 SMU1Q2TAY7 513 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 PAOXQ6QHF9 649 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 UNC5DQ6UXZ4 953 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 GOLGA7Q7Z5G4 137 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 LINC01465Q8N7H1 131 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 GPR150Q8NGU9 434 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FATE1Q969F0 183 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 SCRN2Q96FV2 425 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 NFS1Q9Y697 457 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FEN1P39748 380 aaKnown RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FOLH1Q04609 750 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 TAB1Q15750 504 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 NEDD8Q15843 81 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 TRIQKQ629K1 86 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 TMPRSS11AQ6ZMR5 421 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 PTCHD4Q6ZW05 846 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FGD2Q7Z6J4 655 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 THAP5Q7Z6K1 395 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 DNASE1L2Q92874 299 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FOXJ1Q92949 421 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ASB9Q96DX5 294 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 MTERF3Q96E29 417 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 GPATCH1Q9BRR8 931 aaKnown RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 CPEB1Q9BZB8 566 aaKnown RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 ARHGEF3Q9NR81 526 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FBXW2Q9UKT8 454 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 FADS3Q9Y5Q0 445 aa11.68□□□□□ -0.54
PTPRF-205ENST00000414879 DNMT3AQ9Y6K1 912 aaPredicted RBP11.68□□□□□ -0.54
PTPRF-205ENST00000414879 KPNA4O00629 521 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-205ENST00000414879 IGFBP5P24593 272 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 SLC7A1P30825 629 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 HKDC1Q2TB90 917 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 ZNF678Q5SXM1 525 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 PDZK1Q5T2W1 519 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 RANBP10Q6VN20 620 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 B3GNT6Q6ZMB0 384 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 SCD5Q86SK9 330 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 OAFQ86UD1 273 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 HPS6Q86YV9 775 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 SLC9A6Q92581 669 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 MSANTD3Q96H12 275 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 PELOQ9BRX2 385 aaKnown RBP11.67□□□□□ -0.54
PTPRF-205ENST00000414879 KLF16Q9BXK1 252 aaPredicted RBP11.67□□□□□ -0.54
PTPRF-205ENST00000414879 MCIDASD6RGH6 385 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 TYROBPO43914 113 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 HNRNPCP07910 306 aaKnown RBP eCLIP11.67□□□□□ -0.54
PTPRF-205ENST00000414879 ALOX5P09917 674 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 ITPKBP27987 946 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 STAT5AP42229 794 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 DPP6P42658 865 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 BLVRAP53004 296 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 TOMM20Q15388 145 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 DGKKQ5KSL6 1271 aa11.67□□□□□ -0.54
PTPRF-205ENST00000414879 VWA5B1Q5TIE3 1220 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms