RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 STX16-NPEPL1H3BU86 382 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 STX16O14662 325 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 EBLN1P0CF75 366 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SHMT2P34897 504 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 DUSP3P51452 185 aaPredicted RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SCAPQ12770 1279 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 AGTRAPQ6RW13 159 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 C15orf39Q6ZRI6 1047 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 C14orf80Q86SX3 495 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 OR9A1PQ8NGU1 263 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SMG9Q9H0W8 520 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 ATXN10Q9UBB4 475 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 RAB26Q9ULW5 256 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 PHF24Q9UPV7 400 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 GNEQ9Y223 722 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SLC22A14Q9Y267 594 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 OR5K4A6NMS3 321 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SHOX2O60902 331 aaPredicted RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 CTSAP10619 480 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 RPS9P46781 194 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 TM4SF4P48230 202 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 ELAVL3Q14576 367 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 GALNT7Q86SF2 657 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 RASGRP3Q8IV61 690 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SUSD2Q9UGT4 822 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 A0A0J9YVX5 310 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 MYADML2A6NDP7 307 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 DBTP11182 482 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 PRKCHP24723 683 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 MSX2P35548 267 aaPredicted RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 PIK3R6Q5UE93 754 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 KLHL17Q6TDP4 642 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SERINC1Q9NRX5 453 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 MRPS7Q9Y2R9 242 aaKnown RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 HAT1O14929 419 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 NDUFS4O43181 175 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 KLF8O95600 359 aaPredicted RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 HOXA11P31270 313 aaPredicted RBP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 CSTF2P33240 577 aaKnown RBP eCLIP16.88■□□□□ 0.29
PHRF1-202ENST00000413872 LMAN2Q12907 356 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 ELOCQ15369 112 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 LMX1AQ8TE12 382 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SLC5A11Q8WWX8 675 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 SLC2A6Q9UGQ3 507 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 IRS2Q9Y4H2 1338 aa16.88■□□□□ 0.29
PHRF1-202ENST00000413872 UBE2QL1A1L167 161 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 RGS10O43665 173 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TGFB1P01137 390 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 HLA-EP13747 358 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 PROZP22891 400 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 CDH12P55289 794 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 ZDHHC21Q8IVQ6 265 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 C2CD4AQ8NCU7 369 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 CIB1Q99828 191 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 KXD1Q9BQD3 176 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 GTPBP2Q9BX10 602 aaKnown RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 P2RX2Q9UBL9 471 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TSC22D4Q9Y3Q8 395 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 HRH2P25021 359 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 DCTN2Q13561 401 aaKnown RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TMIGD1Q6UXZ0 262 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TRAM1L1Q8N609 369 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 OR4C6Q8NH72 309 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 MKKSQ9NPJ1 570 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 C19orf25Q9UFG5 118 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 SPATA2Q9UM82 520 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 KLF11O14901 512 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 GADD45GO95257 159 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 SERPINA1P01009 418 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 SLC29A4Q7RTT9 530 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 IMP4Q96G21 291 aaKnown RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TBL1XR1Q9BZK7 514 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 SERTAD3Q9UJW9 196 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 A0A0D9SEW6 157 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 HEPACAM2A8MVW5 462 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 RAP2AP10114 183 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 GSTM4Q03013 218 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 TMEM115Q12893 351 aaPredicted RBP16.87■□□□□ 0.29
PHRF1-202ENST00000413872 ATP1A4Q13733 1029 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 ZSWIM7Q19AV6 140 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 RINLQ6ZS11 566 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 ADGRG6Q86SQ4 1221 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 C7orf57Q8NEG2 295 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 KCNK6Q9Y257 313 aa16.87■□□□□ 0.29
PHRF1-202ENST00000413872 LEFTY1O75610 366 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 LIN54Q6MZP7 749 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 EFHD2Q96C19 240 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-202ENST00000413872 NEUROD4Q9HD90 331 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 FLRT1Q9NZU1 646 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 REM1O75628 298 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 STC2O76061 302 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 SIM2Q14190 667 aaPredicted RBP16.86■□□□□ 0.29
PHRF1-202ENST00000413872 PHF19Q5T6S3 580 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 C1orf52Q8N6N3 182 aaKnown RBP16.86■□□□□ 0.29
PHRF1-202ENST00000413872 BDKRB1P46663 353 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 NFATC2Q13469 925 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 RTP2Q5QGT7 225 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 Q6ZVL8 140 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 ZDHHC14Q8IZN3 488 aa16.86■□□□□ 0.29
PHRF1-202ENST00000413872 ATP6V1C2Q8NEY4 427 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms